Encoding MS/MS spectra using formula transformers for inferring molecular properties
☆76Jun 5, 2024Updated last year
Alternatives and similar repositories for mist
Users that are interested in mist are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Predicting tandem mass spectra from molecules☆135Feb 10, 2026Updated last month
- Large-scale tandem mass spectrum clustering using fast nearest neighbor searching.☆33Feb 12, 2026Updated last month
- ☆22Sep 18, 2025Updated 6 months ago
- a python package for molecular formula analysis in MS-based small molecule studies☆33Jan 28, 2026Updated last month
- deep learning based prediction of structures and functional groups from MS/MS spectra☆11Jan 31, 2025Updated last year
- MassSpecGym: A benchmark for the discovery and identification of molecules (NeurIPS 2024 Spotlight)☆116Nov 13, 2025Updated 4 months ago
- A Deep Learning Framework to Interpret Raw Mass Spectrometry (m/z) Data☆26Jan 21, 2024Updated 2 years ago
- ☆12Jan 16, 2025Updated last year
- Tandem Mass Spectrum Prediction with Graph Transformers☆100Aug 26, 2024Updated last year
- Predicting MS1 precursor chemical formula from MS/MS data☆24Sep 20, 2023Updated 2 years ago
- The Mass Spec Query Language (MassQL) is a domain specific language meant to be a succinct way to express a query in a mass spectrometry …☆56Mar 18, 2026Updated last week
- Metabolomics software for database-assisted deconvolution of MS/MS spectra☆19Jan 24, 2024Updated 2 years ago
- MS2Query - machine learning assisted library querying of MS/MS spectra☆56Nov 6, 2025Updated 4 months ago
- ☆26Updated this week
- SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository…☆142Nov 7, 2025Updated 4 months ago
- ☆15Jun 3, 2021Updated 4 years ago
- Python library for processing (tandem) mass spectrometry data and for computing spectral similarities.☆253Updated this week
- ☆22Mar 12, 2026Updated last week
- ☆29Jun 23, 2023Updated 2 years ago
- Molecular formula discovery via bottom-up MS/MS interrogation☆13Sep 4, 2024Updated last year
- Efficiently predicting high resolution mass spectra with graph neural networks☆32Aug 3, 2023Updated 2 years ago
- A bioinformatic tool facilitating automated in-source fragmentation identification☆10Sep 6, 2022Updated 3 years ago
- asari, metabolomics data preprocessing☆60Updated this week
- NeatMS is an open source python package for untargeted LCMS signal labelling and filtering.☆34Aug 19, 2021Updated 4 years ago
- Improve the accuracy of database search by using BERT to embed MS/MS reasonably☆20Oct 15, 2024Updated last year
- Self-supervised learning of molecular representations from millions of tandem mass spectra using DreaMS (Nat Biotechnology)☆166Mar 4, 2026Updated 3 weeks ago
- Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".☆30Apr 11, 2023Updated 2 years ago
- Goslin is the Grammar on succinct lipid nomenclature.☆13Nov 20, 2025Updated 4 months ago
- ☆11Feb 20, 2026Updated last month
- Spectral entropy for mass spectrometry data.☆36Mar 17, 2026Updated last week
- Molecular fingerprint prediction from MS/MS (FingerID).☆19Feb 28, 2018Updated 8 years ago
- Predicting molecular fingerprint from electron−ionization mass spectrum with deep neural networks☆36Mar 21, 2024Updated 2 years ago
- Package to perform annotations of features from LC-MS All-ion fragmentation (AIF) metabolomics datasets☆13Mar 18, 2026Updated last week
- ☆20Jul 12, 2023Updated 2 years ago
- Group-DIA, a software for analyzing multiple DIA data files☆13Dec 5, 2016Updated 9 years ago
- Awesome papers and codes list of small molecule mass spectrometry-related machine learning methods☆36Jan 18, 2026Updated 2 months ago
- MetEx is a tool to extract and annotate metabolites from liquid chromatography–mass spectrometry data.☆18Nov 14, 2023Updated 2 years ago
- Paired Mass Distance(PMD) analysis for GC/LC-MS based nontarget analysis☆11May 6, 2025Updated 10 months ago
- ☆72Aug 21, 2024Updated last year