Encoding MS/MS spectra using formula transformers for inferring molecular properties
☆83Jun 5, 2024Updated 2 years ago
Alternatives and similar repositories for mist
Users that are interested in mist are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Predicting tandem mass spectra from molecules☆167Oct 5, 2026Updated last week
- MassSpecGym: A benchmark for the discovery and identification of molecules (NeurIPS 2024 Spotlight)☆155May 8, 2026Updated 5 months ago
- ☆24Sep 18, 2025Updated last year
- a python package for molecular formula analysis in MS-based small molecule studies☆41Aug 27, 2026Updated last month
- Large-scale tandem mass spectrum clustering using fast nearest neighbor searching.☆36Jun 13, 2026Updated 4 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A Deep Learning Framework to Interpret Raw Mass Spectrometry (m/z) Data☆26Jan 21, 2024Updated 2 years ago
- deep learning based prediction of structures and functional groups from MS/MS spectra☆13Jan 31, 2025Updated last year
- Deep learning similarity measure for comparing MS/MS spectra with respect to their chemical similarity☆89Sep 15, 2026Updated 3 weeks ago
- ☆13Jan 16, 2025Updated last year
- Self-supervised learning of molecular representations from millions of tandem mass spectra using DreaMS (Nat Biotechnology)☆215Jun 5, 2026Updated 4 months ago
- Tandem Mass Spectrum Prediction with Graph Transformers☆101Aug 26, 2024Updated 2 years ago
- Predicting MS1 precursor chemical formula from MS/MS data☆28Sep 20, 2023Updated 3 years ago
- MS2Query - machine learning assisted library querying of MS/MS spectra☆60Nov 6, 2025Updated 11 months ago
- ☆125Mar 10, 2026Updated 7 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- The Mass Spec Query Language (MassQL) is a domain specific language meant to be a succinct way to express a query in a mass spectrometry …☆58Apr 23, 2026Updated 5 months ago
- Metabolomics software for database-assisted deconvolution of MS/MS spectra☆20Jan 24, 2024Updated 2 years ago
- ☆15Jun 3, 2021Updated 5 years ago
- SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository…☆170Aug 25, 2026Updated last month
- Python library for processing (tandem) mass spectrometry data and for computing spectral similarities.☆273Updated this week
- NeatMS is an open source python package for untargeted LCMS signal labelling and filtering.☆35Aug 19, 2021Updated 5 years ago
- Efficiently predicting high resolution mass spectra with graph neural networks☆32Aug 3, 2023Updated 3 years ago
- Molecular formula discovery via bottom-up MS/MS interrogation☆13Sep 4, 2024Updated 2 years ago
- A bioinformatic tool facilitating automated in-source fragmentation identification☆11Sep 6, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Ms2 basEd saMple vectOrization (memo) package☆17Jun 13, 2023Updated 3 years ago
- Improve the accuracy of database search by using BERT to embed MS/MS reasonably☆21Oct 15, 2024Updated last year
- ☆31Jun 23, 2023Updated 3 years ago
- asari, metabolomics data preprocessing☆69Sep 28, 2026Updated 2 weeks ago
- ☆30Aug 25, 2026Updated last month
- Spectral entropy for mass spectrometry data.☆39Oct 5, 2026Updated last week
- Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".☆31Apr 11, 2023Updated 3 years ago
- Goslin is the Grammar on succinct lipid nomenclature.☆14Sep 16, 2026Updated 3 weeks ago
- ☆12Feb 20, 2026Updated 7 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Predicting molecular fingerprint from electron−ionization mass spectrum with deep neural networks☆36Mar 21, 2024Updated 2 years ago
- Molecular fingerprint prediction from MS/MS (FingerID).☆20Feb 28, 2018Updated 8 years ago
- Paired Mass Distance(PMD) analysis for GC/LC-MS based nontarget analysis☆12Updated this week
- ☆77Aug 21, 2024Updated 2 years ago
- ☆20Jul 12, 2023Updated 3 years ago
- Group-DIA, a software for analyzing multiple DIA data files☆13Dec 5, 2016Updated 9 years ago
- MetEx is a tool to extract and annotate metabolites from liquid chromatography–mass spectrometry data.☆18Nov 14, 2023Updated 2 years ago