samgoldman97 / mist
Encoding MS/MS spectra using formula transformers for inferring molecular properties
☆55Updated 11 months ago
Alternatives and similar repositories for mist:
Users that are interested in mist are comparing it to the libraries listed below
- Predicting tandem mass spectra from molecules☆91Updated last year
- MassSpecGym: A benchmark for the discovery and identification of molecules (NeurIPS 2024 Spotlight)☆69Updated last month
- Meet FIORA! An in silico fragmentation algorithm designed to predict tandem mass spectra (MS/MS) with high accuracy. Using graph neural n…☆31Updated last week
- ☆63Updated 8 months ago
- Deep learning similarity measure for comparing MS/MS spectra with respect to their chemical similarity☆60Updated 2 months ago
- ☆16Updated 2 weeks ago
- DreaMS (Deep Representations Empowering the Annotation of Mass Spectra)☆29Updated last month
- ☆18Updated last year
- Efficiently predicting high resolution mass spectra with graph neural networks☆26Updated last year
- ☆23Updated last year
- ☆31Updated 4 months ago
- a python package for molecular formula analysis in MS-based small molecule studies☆27Updated 2 months ago
- Predicting MS1 precursor chemical formula from MS/MS data☆19Updated last year
- ☆65Updated 3 weeks ago
- Tandem Mass Spectrum Prediction with Graph Transformers☆86Updated 8 months ago
- This repository contains training data for retention time prediction for the identification of metabolites from non-targeted LC-MS based …☆45Updated last month
- [Bioinformatics] 3DMolMS: prediction of tandem mass spectra from 3D molecular conformations☆21Updated last month
- A python client for the ClassyFire API☆16Updated 5 years ago
- ☆23Updated last year
- ☆25Updated last year
- Predicting molecular fingerprint from electron−ionization mass spectrum with deep neural networks☆36Updated last year
- Python-based Informatics Kit for Analysing Chemical Units☆71Updated 10 months ago
- pyPept: a python library to generate atomistic 2D and 3D representations of peptides☆70Updated 8 months ago
- Fully automated docking pipeline (can be run in distributed environments)☆44Updated this week
- Community-Maintained Version of mordred☆68Updated this week
- Novana is a cheminformatics tool that extends the decomposition of molecules into Bemis-Murcko frameworks.☆52Updated last month
- Open-source tool for synthons-based library design.☆79Updated 4 months ago
- Awesome papers and codes list of small molecule mass spectrometry-related machine learning methods☆27Updated last month
- Publicly-accessible repo for ACS paper "Rapid Approximate Subset-Based Spectra Prediction for Electron Ionization−Mass Spectrometry" (RAS…☆21Updated 2 years ago
- Fully automated high-throughput MD pipeline☆60Updated this week