samgoldman97 / mistLinks
Encoding MS/MS spectra using formula transformers for inferring molecular properties
☆64Updated last year
Alternatives and similar repositories for mist
Users that are interested in mist are comparing it to the libraries listed below
Sorting:
- Predicting tandem mass spectra from molecules☆106Updated last month
- MassSpecGym: A benchmark for the discovery and identification of molecules (NeurIPS 2024 Spotlight)☆88Updated 3 months ago
- Deep learning similarity measure for comparing MS/MS spectra with respect to their chemical similarity☆70Updated this week
- ☆68Updated last year
- ☆32Updated 8 months ago
- ☆20Updated last year
- Predicting MS1 precursor chemical formula from MS/MS data☆23Updated last year
- Efficiently predicting high resolution mass spectra with graph neural networks☆28Updated 2 years ago
- Tandem Mass Spectrum Prediction with Graph Transformers☆93Updated last year
- Meet FIORA! An in silico fragmentation algorithm designed to predict tandem mass spectra (MS/MS) with high accuracy. Using graph neural n…☆37Updated this week
- a python package for molecular formula analysis in MS-based small molecule studies☆30Updated last month
- COCONUT (COlleCtion of Open Natural prodUcTs): A comprehensive platform facilitating natural product research by providing data, tools, a…☆34Updated this week
- ☆26Updated 2 years ago
- [Bioinformatics] 3DMolMS: prediction of tandem mass spectra from 3D molecular conformations☆22Updated 3 months ago
- pyPept: a python library to generate atomistic 2D and 3D representations of peptides☆75Updated last year
- ☆17Updated last week
- This repository contains training data for retention time prediction for the identification of metabolites from non-targeted LC-MS based …☆52Updated last month
- Awesome papers and codes list of small molecule mass spectrometry-related machine learning methods☆32Updated 2 months ago
- Bioinformatics and Cheminformatics protocols for peptide analysis☆43Updated 2 years ago
- A python client for the ClassyFire API☆16Updated 5 years ago
- Self-supervised learning of molecular representations from millions of tandem mass spectra using DreaMS (Nat Biotechnology)☆98Updated 2 weeks ago
- ☆50Updated 8 months ago
- ☆27Updated last year
- Write reproducible code for getting and processing ChEMBL☆78Updated this week
- Python-based Informatics Kit for Analysing Chemical Units☆72Updated last year
- Python package to atom map, correct and suggest enzymatic reactions☆40Updated last year
- 🔥 PyTorch implementation of GNINA scoring function for molecular docking☆69Updated 5 months ago
- The MinHashed Atom Pair fingerprint of radius 2☆115Updated 2 years ago
- Recursion's molecular foundation model☆57Updated 2 months ago
- SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository…☆115Updated this week