Trust Region Optimization in Python
☆28Nov 11, 2025Updated 5 months ago
Alternatives and similar repositories for fides
Users that are interested in fides are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…☆32Apr 14, 2026Updated 2 weeks ago
- Python package for working with PEtab files☆16Mar 31, 2026Updated last month
- High-performance sensitivity analysis for large ordinary differential equation models☆136Apr 14, 2026Updated 2 weeks ago
- python Parameter EStimation TOolbox☆270Apr 24, 2026Updated last week
- Create parameter estimation problems for ODE models☆70Apr 24, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆28Mar 13, 2023Updated 3 years ago
- Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.☆21Dec 15, 2025Updated 4 months ago
- Create nice documentation for your MatLab project using doxygen☆15Jul 14, 2019Updated 6 years ago
- distributed, likelihood-free inference☆220Apr 14, 2026Updated 2 weeks ago
- Cython interface for the interior point optimizer Ipopt☆283Apr 20, 2026Updated last week
- Crypto ticker and graph for the Pimoroni InkyPHAT display☆10Feb 27, 2024Updated 2 years ago
- Derivative-free nonlinear global optimizer with python interface☆17Nov 11, 2019Updated 6 years ago
- source code for VESAEA, paper in CEC2019☆10Mar 27, 2019Updated 7 years ago
- Python utilities for SBML☆41Apr 23, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Julia Catalyst.jl importers for various reaction network file formats like BioNetGen and stoichiometry matrices☆27Apr 20, 2026Updated last week
- This repository is the official implementation of the source code of the paper "B2Opt: Learning to Optimize Black-box Optimization with L…☆11Aug 16, 2024Updated last year
- PESTO: Parameter EStimation TOolbox, Bioinformatics, btx676, 2017.☆27Mar 2, 2020Updated 6 years ago
- Accelerating Bayesian reaction optimization with limited data☆13Aug 5, 2023Updated 2 years ago
- ☆20May 28, 2024Updated last year
- ☆11Feb 28, 2022Updated 4 years ago
- Reaction Analysis through Imaging of Chemical Units☆16Dec 5, 2025Updated 4 months ago
- Measure, display and log temperatures with Raspberry PI☆14May 31, 2024Updated last year
- ☆12Mar 17, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- The Systems Biology Ontology (SBO) is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in part…☆12May 16, 2023Updated 2 years ago
- Chemios Framework 👨🏾🔬: Accelerating Science through Automation☆36Dec 10, 2021Updated 4 years ago
- Probabilistic Neural Network☆17Mar 19, 2020Updated 6 years ago
- Interactive tutorials and documentation for file based Python interface.☆12Mar 21, 2025Updated last year
- A suite of chromatography programms: Breakthrough curve modelling, isotherm determination, parameters fitting...☆14Jun 15, 2023Updated 2 years ago
- KVXOPT -- Python Software for Convex Optimization containing more wrappers suite-sparse.☆13Feb 22, 2026Updated 2 months ago
- ☆17Mar 22, 2026Updated last month
- Registry of containerized biosimulation tools that support a standard command-line interface☆15Updated this week
- The extension for Sphinx documentation projects that handles redirects for moved pages. Based on the its configuration, the extension gen…☆16Feb 27, 2026Updated 2 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- GenSSI 2.0 - Generating Series for testing Structural Identifiability☆15Apr 6, 2024Updated 2 years ago
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆13Aug 21, 2024Updated last year
- polygenic scores using variational inference on GWAS summary statistics from multiple cohorts☆11Dec 7, 2022Updated 3 years ago
- ☆15Mar 3, 2017Updated 9 years ago
- Committee-Based Active Learning for Surrogate-Assisted Particle Swarm Optimization of Expensive Problems☆19May 21, 2018Updated 7 years ago
- ☆19Apr 29, 2024Updated 2 years ago
- A PyTorch annotated replication of the paper: https://arxiv.org/abs/2006.10637☆20Nov 20, 2020Updated 5 years ago