fides-dev / fides
Trust Region Optimization in Python
☆27Updated last year
Alternatives and similar repositories for fides:
Users that are interested in fides are comparing it to the libraries listed below
- Advanced Multilanguage Interface to CVODES and IDAS☆114Updated this week
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆61Updated last week
- A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…☆29Updated 2 weeks ago
- python Parameter EStimation TOolbox☆232Updated this week
- Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.☆21Updated this week
- Python wrapper around cvodes (from the sundials library)☆34Updated last month
- Python package for working with PEtab files☆14Updated 2 months ago
- Tool to convert an ODE model specified in the YAML format to SBML.☆12Updated last year
- PESTO: Parameter EStimation TOolbox, Bioinformatics, btx676, 2017.☆26Updated 4 years ago
- Create parameter estimation problems for ODE models☆55Updated last week
- Modeling toolkit for biochemical simulation☆74Updated 3 weeks ago
- Hybrid Modeling Framework☆23Updated 2 years ago
- Framework for Object Oriented Modelling of Bioprocesses☆15Updated 4 years ago
- Python utilities for SBML☆40Updated 3 weeks ago
- Just-in-Time Compilation for Ordinary Differential Equations☆63Updated this week
- Design of Experiments in Python☆27Updated 4 years ago
- Design of experiments for Python☆36Updated 6 months ago
- C++ implementation of the Diffusion Map, with Python bindings☆10Updated 7 years ago
- distributed, likelihood-free inference☆208Updated 3 months ago
- Julia Catalyst.jl importers for various reaction network file formats like BioNetGen and stoichiometry matrices☆26Updated this week
- Development repository for Kipet.☆20Updated 2 years ago
- Toolbox for non-linear calibration modeling.☆24Updated 3 months ago
- A derivative-free solver for general nonlinear optimization.☆47Updated last month
- Python wrapper for Intel Math Kernel Library (MKL) matrix multiplication☆80Updated 3 months ago
- A software package for flexible HPC GPs☆15Updated 2 weeks ago
- Python library for parallel multiobjective simulation optimization☆76Updated 5 months ago
- Chemical Reaction Neural Network☆83Updated 6 months ago
- A tool to optimize real world problems☆88Updated this week
- Python wrapper of LSODA (solving ODEs) which can be called from within numba functions.☆93Updated last year
- Python-based Derivative-Free Optimization with Bound Constraints☆79Updated 5 months ago