Alternatives and similar repositories for pyphetools

Users that are interested in pyphetools are comparing it to the libraries listed below

• monarch-initiative / phenopacket-store
  Collections of GA4GH phenopackets that represent individuals with Mendelian diseases.
  ☆23Updated this week
• microbiomedata / nmdc-metadata
  Managing metadata and policy around metadata in NMDC
  ☆2Updated last year
• phenopackets / phenopacket-schema
  Repository for the GA4GH phenopacket schema
  ☆88Updated 10 months ago
• monarch-initiative / monarchr
  R package for easy access, manipulation, and analysis of the Monarch Initiative or other KGX-formatted knowledge graphs.
  ☆15Updated 2 months ago
• obophenotype / upheno
  The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.
  ☆79Updated last week
• Planteome / plant-trait-ontology
  Explore the Plant Trait Ontology on the Planteome site.
  ☆45Updated this week
• monarch-initiative / phenol
  phenol: Phenotype ontology library
  ☆23Updated 3 months ago
• TheJacksonLaboratory / LIRICAL
  LIkelihood Ratio Interpretation of Clinical AbnormaLities
  ☆29Updated last month
• phenopackets / phenopacket-format
  ☆26Updated 6 years ago
• OHMI-ontology / OHMI
  OHMI: The Ontology of Host-Microbiome Interactions
  ☆12Updated 3 years ago
• ga4gh / va-spec
  An information model for representing variant annotations.
  ☆21Updated last week
• krishnanlab / txt2onto
  Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.
  ☆25Updated 11 months ago
• monarch-initiative / dipper
  Data Ingestion Pipeline for Monarch
  ☆57Updated 2 years ago
• phenopackets / phenopacket-tools
  An app and library for building, conversion, and validation of GA4GH Phenopackets.
  ☆16Updated last month
• TheJacksonLaboratory / hpo-web
  a web application to search and navigate the Human Phenotype Ontology (HPO)
  ☆14Updated 2 months ago
• The-Sequence-Ontology / SO-Ontologies
  Collect of SO Ontologies
  ☆100Updated this week
• biocommons / biocommons.seqrepo
  non-redundant, compressed, journalled, file-based storage for biological sequences
  ☆42Updated last week
• umccr / cwl-ica
  A collection of cwl-ica workflows along with a user guide for the commands to use and contributions guide
  ☆11Updated this week
• ohsu-comp-bio / g2p-aggregator
  Associations of genomic features, drugs and diseases
  ☆48Updated 2 years ago
• arpcard / aro
  The Antibiotic Resistance Ontology (ARO) organizes the information describing the ability of a microorganism to withstand the effects of …
  ☆19Updated 3 weeks ago
• moonso / ped_parser
  A python tool for parsing pedigree files
  ☆16Updated 7 years ago
• bio-ontology-research-group / phenomenet-vp
  A phenotype-based tool for variant prioritization in WES and WGS data
  ☆38Updated 2 years ago
• EBISPOT / DUO
  Ontology for consent codes and data use requirements
  ☆67Updated 2 years ago
• ga4gh / htsget
  Python client for GA4GH htsget protocol
  ☆15Updated 2 years ago
• ga4gh / data-repository-service-schemas
  A repository for the schemas used for the Data Repository Service.
  ☆61Updated this week
• ga4gh / vrs-python
  GA4GH Variation Representation Python Implementation
  ☆58Updated this week
• geneontology / helpdesk
  The Gene Ontology Helpdesk
  ☆16Updated 6 months ago
• biocompute-objects / BCO_Documentation
  Repository for documentation to support the IEEE 2791-2020 standard. Please see our home page for communications/publications:
  ☆17Updated last year
• GeneDx / txt2hpo
  Python library for extracting HPO encoded phenotypes from text
  ☆30Updated last year
• WGLab / EHR-Phenolyzer
  A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list
  ☆37Updated 2 years ago