Alternatives and similar repositories for pyphetools

Users that are interested in pyphetools are comparing it to the libraries listed below

• monarch-initiative / phenopacket-store
  Collections of GA4GH phenopackets that represent individuals with Mendelian diseases.
  ☆24Updated 2 months ago
• phenopackets / phenopacket-format
  ☆26Updated 5 years ago
• TheJacksonLaboratory / LIRICAL
  LIkelihood Ratio Interpretation of Clinical AbnormaLities
  ☆28Updated 3 weeks ago
• phenopackets / phenopacket-schema
  Repository for the GA4GH phenopacket schema
  ☆86Updated 7 months ago
• monarch-initiative / phenol
  phenol: Phenotype ontology library
  ☆23Updated 2 weeks ago
• microbiomedata / nmdc-metadata
  Managing metadata and policy around metadata in NMDC
  ☆2Updated last year
• monarch-initiative / monarch-disease-ontology-RETIRED
  THIS IS THE OLD REPO: Use this one instead: https://github.com/monarch-initiative/mondo-build
  ☆17Updated 4 years ago
• TheJacksonLaboratory / HPOworkbench
  Human Phenotype Ontology Workbench
  ☆18Updated last year
• monarch-initiative / owlsim-v3
  Ontology Based Profile Matching
  ☆17Updated 2 years ago
• ga4gh / va-spec
  An information model for representing variant annotations.
  ☆18Updated last week
• ga4gh / phenopacket-tools
  An app and library for building, conversion, and validation of GA4GH Phenopackets.
  ☆14Updated 2 weeks ago
• monarch-initiative / dipper
  Data Ingestion Pipeline for Monarch
  ☆57Updated 2 years ago
• obophenotype / upheno
  The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.
  ☆79Updated last month
• CLO-ontology / CLO
  Communitiy-based Cell Line Ontology
  ☆18Updated 10 months ago
• krishnanlab / txt2onto
  Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.
  ☆24Updated 8 months ago
• obophenotype / ncbitaxon
  Build for NCBITaxon
  ☆27Updated last month
• pato-ontology / pato
  PATO - the Phenotype And Trait Ontology
  ☆59Updated 2 weeks ago
• OHMI-ontology / OHMI
  OHMI: The Ontology of Host-Microbiome Interactions
  ☆12Updated 3 years ago
• TheJacksonLaboratory / hpo-web
  a web application to search and navigate the Human Phenotype Ontology (HPO)
  ☆14Updated last week
• drseb / HPO-translations
  Internationalisation of the HPO content
  ☆19Updated 2 years ago
• Knowledge-Graph-Hub / kg-obo
  A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub
  ☆32Updated last year
• ejp-rd-vp / CDE-semantic-model
  Semantic data model of the set of common data elements for rare disease registration
  ☆12Updated last year
• monarch-initiative / loinc2hpo
  Java library to map LOINC-encoded test results to Human Phenotype Ontology
  ☆31Updated last year
• TheJacksonLaboratory / loinc2hpoAnnotation
  loinc2hpo Annotation Data
  ☆24Updated 2 years ago
• opentargets / OnToma
  Map your disease and phenotype terms to the Open Targets platform ontology
  ☆21Updated 5 months ago
• mapping-commons / mh_mapping_initiative
  Repo to organise the mouse-human phenotype mapping initiative and reconcile resources.
  ☆13Updated 4 months ago
• ga4gh / vrs-python
  GA4GH Variation Representation Python Implementation
  ☆56Updated 2 weeks ago
• GeneDx / txt2hpo
  Python library for extracting HPO encoded phenotypes from text
  ☆29Updated last year
• OHDSI / Genomic-CDM
  Repository for development of the genomic module of the CDM.
  ☆20Updated 5 years ago
• monarch-initiative / Squirls
  Interpretable prioritization of splice variants in diagnostic next-generation sequencing
  ☆16Updated last year