MatchMiner: An open source computational platform for matching genomic profiles to precision cancer medicine clinical trials
☆53Oct 11, 2022Updated 3 years ago
Alternatives and similar repositories for matchminer
Users that are interested in matchminer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Open source engine for matching cancer patients to precision medicine clinical trials (V2).☆42Dec 1, 2023Updated 2 years ago
- Backend server for Genome Nexus☆46Sep 1, 2026Updated 3 weeks ago
- Clonal reconstruction from HTS data☆10Oct 27, 2021Updated 4 years ago
- Programming for Biology Class @ CSHL 2022☆14Oct 4, 2024Updated last year
- Jupyter Notebooks and related files for the Center for High Performance Computing's Python lectures☆15Aug 21, 2026Updated last month
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A port of the matrixStats API to work with DelayedMatrix objects from the DelayedArray package☆15May 8, 2026Updated 4 months ago
- Roslin is a reproducible and reusable workflow for Cancer Genomic Sequencing Analysis☆16Nov 13, 2024Updated last year
- A GenePattern module for running the ssGSEA method☆17Mar 3, 2025Updated last year
- ☆37Updated this week
- A platform for matching patient-specific genomic profiles to precision cancer medicine clinical trials☆22Dec 5, 2023Updated 2 years ago
- hgvslib provides functions to parse and compare the equivalency of variant strings described according to Human Genome Variation Society …☆18Dec 26, 2022Updated 3 years ago
- This python package is for transitioning bioconductor from SVN to git☆14Mar 15, 2023Updated 3 years ago
- Annotates variants in MAF with OncoKB annotation.☆147Aug 25, 2026Updated last month
- Interface to 10x Genomics' 1.3 m single cell data set☆19Aug 2, 2018Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆10Jan 8, 2018Updated 8 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Nov 26, 2025Updated 10 months ago
- The Unsupervised Phenome Model (UPhenome) for learning phenotypes on heterogeneous EHR data☆17Dec 9, 2015Updated 10 years ago
- ☆22Oct 6, 2023Updated 2 years ago
- BhGLM (Bayesian hierarchical GLMs and survival models)☆22Jun 11, 2024Updated 2 years ago
- A neural network model to predict splice site usage and splicing-altering mutations☆17Jul 24, 2025Updated last year
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Jul 19, 2022Updated 4 years ago
- A Standard Database for Drug Repositioning☆19Jul 28, 2017Updated 9 years ago
- An information model for representing variant annotations.☆28Updated this week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆21Aug 30, 2022Updated 4 years ago
- PAthway Representation and Analysis by Direct Inference on Graphical Models☆46Feb 7, 2018Updated 8 years ago
- Identifying recurrent mutations in cancer☆40Mar 4, 2021Updated 5 years ago
- ☆53Sep 1, 2026Updated 3 weeks ago
- Code and webpages for our study on teaching humans to defer to an AI☆12Nov 6, 2023Updated 2 years ago
- An arctic, north-bluish clean and elegant iTerm2 color scheme.☆15Apr 22, 2024Updated 2 years ago
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Oct 5, 2017Updated 8 years ago
- Course website for Genomic Data Visualization 2022☆16Dec 28, 2022Updated 3 years ago
- Code for ICML 2021 paper "Regularizing towards Causal Invariance: Linear Models with Proxies" (ICML 2021)☆11Mar 14, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- This repository contains information about ongoing analysis performed by GIAB☆14Aug 30, 2019Updated 7 years ago
- InspectOmop is a lightweight python 3 package that assists in the extraction of electronic health record(EHR) data from relational databa…☆15Apr 14, 2026Updated 5 months ago
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆49Dec 9, 2025Updated 9 months ago
- ☆29Sep 4, 2023Updated 3 years ago
- Provide R access to the NCI Genomic Data Commons portal.☆91Apr 29, 2026Updated 4 months ago
- Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources☆34Oct 27, 2021Updated 4 years ago
- Biomedical concept relatedness benchmark sampled from electronic health records☆11Jul 14, 2022Updated 4 years ago