dfci / matchminer
MatchMiner: An open source computational platform for matching genomic profiles to precision cancer medicine clinical trials
☆42Updated 2 years ago
Alternatives and similar repositories for matchminer:
Users that are interested in matchminer are comparing it to the libraries listed below
- Associations of genomic features, drugs and diseases☆48Updated 2 years ago
- ☆44Updated 2 weeks ago
- ☆14Updated 5 years ago
- A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list☆37Updated last year
- GA4GH Variation Representation Python Implementation☆55Updated this week
- Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are d…☆22Updated 6 years ago
- Open source engine for matching cancer patients to precision medicine clinical trials (V2).☆36Updated last year
- Central repository for the VICC metakb web application☆15Updated this week
- Search across publicly available datasets to find instances where a drug or cell line of interest has been profiled.☆46Updated 6 years ago
- Dynamic visualization of Electronic Health Record data in the OMOP framework☆28Updated 3 years ago
- Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.☆24Updated 8 months ago
- Python client for GA4GH htsget protocol☆15Updated 2 years ago
- Python and UNIX CLI utilities to simplify interaction with the NIH/NCI Genomics Data Commons☆31Updated 6 years ago
- ARCHS4 RNA-seq processing scripts and web server pages.☆57Updated 4 years ago
- TCGA data acquisition and processing for Project Cognoma☆20Updated 7 years ago
- A platform for matching patient-specific genomic profiles to precision cancer medicine clinical trials☆18Updated last year
- GWAS Catalog Ontology and Curation Infrastructure☆26Updated last month
- Contains tools used by cBioPortal data curators when preparing data for upload into the datahub repos.☆19Updated last month
- simplified searching, fetching, and parsing records from NCBI using their E-utilities interface☆60Updated 10 months ago
- GO-PCA: An Unsupervised Method to Explore Gene Expression Data Using Prior Knowledge☆14Updated 7 years ago
- hgvslib provides functions to parse and compare the equivalency of variant strings described according to Human Genome Variation Society …☆18Updated 2 years ago
- Provided files are a partial extraction of the Orphanet knowledge base on Rare Diseases☆48Updated 5 months ago
- ukbREST: efficient and streamlined data access for reproducible research of large biobanks☆38Updated 3 years ago
- An app and library for building, conversion, and validation of GA4GH Phenopackets.☆13Updated this week
- Python client for MyVariant.info web services.☆23Updated 3 months ago
- Python API for Genomic Data Commons☆18Updated 8 years ago
- Python library for extracting HPO encoded phenotypes from text☆29Updated last year
- Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposing☆32Updated 7 years ago
- LIkelihood Ratio Interpretation of Clinical AbnormaLities☆28Updated last week
- A catalog of appyter notebooks☆35Updated last month