WMBEdmands / compMS2Miner

Related projects ⓘ

Alternatives and complementary repositories for compMS2Miner

• computational-metabolomics / msPurity
  R-package - Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics
  ☆15Updated 6 months ago
• gggraca / MetaboAnnotatoR
  Package to perform annotations of features from LC-MS All-ion fragmentation (AIF) metabolomics datasets
  ☆12Updated 2 years ago
• stanstrup / commonMZ
  A collection of common mz values found in mass spectrometry.
  ☆19Updated 5 months ago
• pattilab / DecoID
  Metabolomics software for database-assisted deconvolution of MS/MS spectra
  ☆18Updated 10 months ago
• ipb-halle / MetFragRelaunched
  Relaunch of the initial MetFrag project.
  ☆17Updated last week
• HuanLab / ISFrag
  A bioinformatic tool facilitating automated in-source fragmentation identification
  ☆10Updated 2 years ago
• eMetaboHUB / MS-CleanR
  ☆25Updated 11 months ago
• RogerGinBer / RHermes
  RHermes is a semi-targeted metabolomics package to deeply characterize biological and environmental samples.
  ☆25Updated last year
• kruvelab / MS2Tox
  MS2Tox is a machine learning tool for predicting ecotoxicity of unidentified chemicals in water by nontarget LC/HRMS
  ☆13Updated last month
• idslme / IDSL.IPA
  Intrinsic Peak Analysis (IPA) pipeline for peak-picking in large-scale untargeted small molecule analysis including metabolomics, lipidom…
  ☆14Updated last year
• cbroeckl / RAMClustR
  Assigning precursor-product ion relationships in indiscriminant MS/MS data
  ☆12Updated 6 months ago
• biosustain / pyOpenMS_UmetaFlow
  Untargeted metabolomics workflow for data processing and analysis written in Jupyter notebooks (Python)
  ☆18Updated 2 weeks ago
• EMSL-Computing / PeakDecoder
  A workflow for metabolite identification and accurate profiling in multidimensional LC-IM-MS-DIA measurements. DOI: 10.5281/zenodo.
  ☆13Updated last year
• alexandrovteam / curatr
  ☆14Updated last year
• madeleineernst / pyMolNetEnhancer
  ☆19Updated last year
• stanstrup / PredRet
  Shiny app for retention time prediction
  ☆9Updated 5 years ago
• ZhuMSLab / DecoMetDIA
  ☆10Updated 2 years ago
• zmahnoor14 / MAW
  Metabolome Annotation Workflow
  ☆25Updated 8 months ago
• ccdmb / BioDendro
  A package to cluster and visualise MS/MS spectral data
  ☆11Updated 3 years ago
• barupal / ChemRICH
  Chemical Similarity Enrichment analysis of metabolomics datasets
  ☆27Updated 4 months ago
• ODonnell-Lipidomics / LipidFinder
  LipidFinder: A computational workflow for discovery of new lipid molecular species
  ☆19Updated 3 years ago
• bihealth / NeatMS
  NeatMS is an open source python package for untargeted LCMS signal labelling and filtering.
  ☆28Updated 3 years ago
• rformassspectrometry / MetaboAnnotation
  High level functionality to support and simplify metabolomics data annotation.
  ☆15Updated this week
• computational-metabolomics / beamspy
  BEAMSpy - Birmingham mEtabolite Annotation for Mass Spectrometry (Python Package)
  ☆17Updated last year
• zamboni-lab / SLAW
  Scalable and self-optimizing processing workflow for untargeted LC-MS
  ☆28Updated 3 months ago
• danielatrivella / NP3_MS_Workflow
  A Pipeline for LC-MS/MS Metabolomics Data Process and Analysis
  ☆11Updated 9 months ago
• kaibioinfo / canopus_treemap
  CANOPUS visualization for Jupyter notebook
  ☆20Updated 2 years ago
• KujawinskiLaboratory / Autotuner
  This repo contains the code needed to run the R package Autotuner. Autotuner is used to identify proper parameters during metabolomics da…
  ☆16Updated 3 years ago
• yufree / pmd
  Paired Mass Distance(PMD) analysis for GC/LC-MS based nontarget analysis
  ☆9Updated 5 months ago
• rformassspectrometry / MsCoreUtils
  Core Utils for Mass Spectrometry Data
  ☆16Updated last month