☆22Feb 25, 2025Updated last year
Alternatives and similar repositories for AF2_benchmark
Users that are interested in AF2_benchmark are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Sep 17, 2024Updated last year
- Converts AlphaFold distograms into distance matrices and saves them into a number of formats☆15Dec 13, 2022Updated 3 years ago
- Cryptic pocket prediction using AlphaFold 2☆25Nov 27, 2022Updated 3 years ago
- ☆17Jan 5, 2024Updated 2 years ago
- ☆12May 3, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A Python package to generate free energy landscape (FEL) of molecular dynamics (MD) trajectory obtained from GROMACS. It also extracts th…☆14Apr 4, 2025Updated last year
- Python package for handling ModelCIF mmCIF and BinaryCIF files☆13Apr 16, 2026Updated last month
- Deep transformer for predicting interchain residue-residue distances of protein complexes☆14Mar 19, 2024Updated 2 years ago
- PyChem-Pro: a molecular viewer, cheminformatics library, molecular descriptor calculator, molecular editor, chemical drawing editor, and …☆138Updated this week
- FlexPose, a framework for AI-based flexible modeling of protein-ligand binding pose.☆57Dec 27, 2023Updated 2 years ago
- ☆52Aug 19, 2024Updated last year
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆184Oct 7, 2025Updated 7 months ago
- Benchmarking deep learning models generating molecules in 3D☆18Apr 12, 2025Updated last year
- NeuralMD for Protein-ligand Binding Simulation, Nature Communicaitons 2025 https://www.nature.com/articles/s41467-025-67808-z☆48Nov 4, 2025Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆20May 7, 2024Updated 2 years ago
- ☆64May 13, 2026Updated last week
- ☆16Oct 27, 2024Updated last year
- Versatile Molecular Editing via Multimodal and Group-optimized Generative Learning☆24May 22, 2025Updated last year
- A variational autoencoder that directly generates the 3D coordinates of immunoglobulin protein backbones.☆32Jul 25, 2022Updated 3 years ago
- ☆18Apr 21, 2026Updated last month
- Generates images from mmCIF/BCIF files☆45Apr 2, 2026Updated last month
- design pipeline for protein, nucleic acid, and small molecule☆42Mar 5, 2026Updated 2 months ago
- ColabFold protocol☆59Oct 17, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Enhanced protein mutational sampling using time-lagged variational autoencoders☆30Sep 17, 2018Updated 7 years ago
- Get access to our MD data files.☆32Nov 22, 2023Updated 2 years ago
- Official open-source of Accurate structure prediction of immune proteins using parameter-efficient transfer learning☆23Mar 19, 2025Updated last year
- 『Pythonで動かしてはじめる量子化学計算』（コロナ社，2024）☆24Jun 5, 2024Updated last year
- Deep convolutional neural networks for protein contact map prediction☆23Aug 5, 2019Updated 6 years ago
- ResPRE is an algorithm for protein residue-residue contact-map prediction☆21May 20, 2019Updated 7 years ago
- Code for ApoDock☆20Apr 7, 2025Updated last year
- This repository provides with custom code and analysis scripts to generate structural ensembles of intrinsically disordered proteins by u…☆23Oct 31, 2025Updated 6 months ago
- ☆35Jun 29, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- NLM Medical Text Indexer (MTI)☆10May 18, 2022Updated 4 years ago
- Contributed and additional nodes for maize☆22Feb 18, 2026Updated 3 months ago
- Service discovery for Finagle cluster with Consul.☆10Sep 27, 2018Updated 7 years ago
- A universal structure-directed lead optimization☆75Jan 30, 2026Updated 3 months ago
- Build conformational representations of Intrinsically Disordered Proteins and Regions by a guided sampling of the protein torsion space☆31Dec 18, 2025Updated 5 months ago
- our in-house version of ProteinMPNN☆39Feb 12, 2026Updated 3 months ago
- Generate intrinsically disordered peptide conformations via machine learning☆25May 26, 2024Updated last year