☆14Nov 5, 2026Updated this week
Alternatives and similar repositories for ALPACA-model
Users that are interested in ALPACA-model are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Git repo for CONIPHER tree building☆28Oct 22, 2026Updated 2 weeks ago
- Framework for Metastatic And Clonal History INtegrative Analysis☆39Mar 5, 2021Updated 5 years ago
- A tool for timing complex copy number gains in cancer.☆24Updated this week
- ☆13Nov 21, 2023Updated 2 years ago
- R package for applying Gamma-Poisson regression to identify statistical enrichment or depletion of somatic mutations in regions after cor…☆32Oct 29, 2025Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- code for 'Cell Types of Origin of the Cell Free Transcriptome' by Vorperian et al☆20Feb 22, 2022Updated 4 years ago
- ABSOLUTE source code that works with allelic copy ratio on both hg19 and hg38☆18Nov 5, 2025Updated last year
- Use Mapnik to render an image file.☆15Mar 6, 2015Updated 11 years ago
- ☆14Sep 2, 2026Updated 2 months ago
- Rocking R at UMCCR☆10Oct 11, 2020Updated 6 years ago
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆46Oct 11, 2026Updated 3 weeks ago
- Fast and exact ILP-based solvers for the Minimum Flow Decomposition problem, and variants of it.☆14Dec 4, 2025Updated 11 months ago
- Multithreaded read analysis☆25May 24, 2026Updated 5 months ago
- cfTools is a versatile R package of analyzing cell-free DNA data.☆11Jun 12, 2026Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- dot plotter on top of minimap2☆17Oct 4, 2026Updated last month
- Find and decompose genomic variation sites in pangenome graphs☆17Aug 17, 2026Updated 2 months ago
- MASCoTE (Multiple Allele-specific Simulation of Copy-number Tumor Evolution) is a simulation framework to generate sequencing reads with …☆13Dec 3, 2020Updated 5 years ago
- ☆14Dec 26, 2025Updated 10 months ago
- Creates a target specific exome_full192.coverage.txt file required by MutSig☆21Sep 15, 2021Updated 5 years ago
- Automate Absolute Copy Number Calling using 'ABSOLUTE' package☆40Nov 28, 2023Updated 2 years ago
- Repository of the TRanslational ONCOlogy library, which includes various algorithms (such as CAPRESE and CAPRI) and the Pipeline for Canc…☆30Updated this week
- rMETL - realignment-based Mobile Element insertion detection Tool for Long read☆23Aug 13, 2024Updated 2 years ago
- ASCAT R package☆205Updated this week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆14Mar 28, 2025Updated last year
- screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics☆10Oct 29, 2020Updated 6 years ago
- WMS in Swift 3 / iOS 10 with MapKit☆16Jan 22, 2017Updated 9 years ago
- Minimum plain text representation of kmer sets☆20Jan 30, 2025Updated last year
- Spatial Computational Inference of MEtastatic Timing (SCIMET)☆14May 28, 2019Updated 7 years ago
- Automated evolutionary annotation of existing datasets using Nextflow☆11Jun 15, 2026Updated 4 months ago
- ☆28Oct 29, 2026Updated last week
- Code accompanying The Evolutionary history of 2,658 cancers☆50Apr 16, 2021Updated 5 years ago
- EMERALD calculates safety-windows by exploring the suboptimal alignment space☆19Jun 15, 2026Updated 4 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆10Feb 18, 2025Updated last year
- BrumiR: A toolkit for de novo discovery of microRNAs from sRNA-seq data.☆12Sep 7, 2022Updated 4 years ago
- A collection of libraries and tools to create programming challenges and competitions☆15Mar 3, 2023Updated 3 years ago
- <Bioinformatics> scCancer2: data-driven in-depth annotations of the tumor microenvironment at single-level resolution☆26Aug 27, 2025Updated last year
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆25Sep 28, 2026Updated last month
- Tool to flag foldback and chimeric artifacts in long-read sequence alignment files☆48Oct 25, 2026Updated last week
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆16Apr 28, 2025Updated last year