Alternatives and similar repositories for synthetic-ehr-benchmarking

Users that are interested in synthetic-ehr-benchmarking are comparing it to the libraries listed below

• ipolharvard / ethos-paper
  ☆73Updated 5 months ago
• nliulab / mimic4ed-benchmark
  Python workflow for generating benchmark datasets and machine learning models from the MIMIC-IV-ED database.
  ☆83Updated 2 years ago
• btheodorou99 / HALO_Inpatient
  ☆27Updated 6 months ago
• som-shahlab / hf_ehr
  Training HuggingFace models on EHR data
  ☆28Updated 3 weeks ago
• lrsoenksen / HAIM
  This repository contains the code to replicate the data processing, modeling and reporting of our Holistic AI in Medicine (HAIM) Publicat…
  ☆128Updated 2 years ago
• rvandewater / YAIB
  🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datase…
  ☆74Updated last week
• ZhiGroup / pytorch_ehr
  source codes based on PyTorch to analyze EHR
  ☆144Updated last year
• Medical-Event-Data-Standard / meds
  Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data
  ☆68Updated 2 months ago
• ratschlab / HIRID-ICU-Benchmark
  Repository for the HiRID ICU Benchmark (HiB) project
  ☆58Updated 2 years ago
• deepmedicine / BEHRT
  Code for BEHRT: Transformer for Electronic Health Records
  ☆111Updated 2 years ago
• MLD3 / FIDDLE
  FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…
  ☆96Updated last month
• healthylaife / MIMIC-IV-Data-Pipeline
  A customizable pipeline for data extraction from MIMIC-IV.
  ☆248Updated last week
• whaleloops / TransformEHR
  ☆42Updated last year
• som-shahlab / femr
  FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…
  ☆153Updated last week
• nyuolab / NYUTron
  public code repository for paper "Health system scale language models are general purpose clinical prediction engines"
  ☆113Updated 2 years ago
• cumc-dbmi / cehrbert
  CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks
  ☆38Updated 2 weeks ago
• mmcdermott / EventStreamGPT
  Dataset and modelling infrastructure for modelling "event streams": sequences of continuous time, multivariate events with complex intern…
  ☆113Updated last month
• CogStack / Foresight
  Deep Generative Modelling of Patient Timelines using Electronic Health Records
  ☆63Updated last month
• Medical-Event-Data-Standard / meds_etl
  A collection of ETLs from common data formats to Medical Event Data Standard
  ☆33Updated this week
• som-shahlab / ehrshot-benchmark
  A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)
  ☆183Updated 2 months ago
• justin13601 / ACES
  [ICLR 2025] ACES: Automatic Cohort Extraction System for Event-Streams
  ☆34Updated 2 months ago
• mmcdermott / MEDS_transforms
  A simple set of MEDS polars-based ETL and transformation functions
  ☆33Updated last month
• MLD3 / FIDDLE-experiments
  Experiments applying FIDDLE on MIMIC-III and eICU. https://doi.org/10.1093/jamia/ocaa139
  ☆25Updated 3 years ago
• XZhang97666 / MultimodalMIMIC
  ☆35Updated 2 years ago
• ZhiGroup / Med-BERT
  Med-BERT, contextualized embedding model for structured EHR data
  ☆295Updated last year
• vanderschaarlab / temporai
  TemporAI: ML-centric Toolkit for Medical Time Series
  ☆118Updated last year
• mmcdermott / comprehensive_MTL_EHR
  Source code for a comprehensive analysis of MTL over EHR timeseries data.
  ☆37Updated 2 years ago
• Medical-Event-Data-Standard / MEDS-DEV
  The MEDS Decentralized Extensible Validation (MEDS-DEV) Benchmark: Establishing Reproducibility and Comparability in ML for Health
  ☆27Updated 2 months ago
• ratschlab / circEWS
  circEWS public code
  ☆70Updated 9 months ago
• RyanWangZf / MediTab
  The code for the paper "MediTab: Scaling Medical Tabular Data Predictors via Data Consolidation, Enrichment, and Refinement"
  ☆20Updated last year