yy6linda / synthetic-ehr-benchmarking
☆30Updated 2 years ago
Alternatives and similar repositories for synthetic-ehr-benchmarking
Users that are interested in synthetic-ehr-benchmarking are comparing it to the libraries listed below
Sorting:
- A collection of ETLs from common data formats to Medical Event Data Standard☆29Updated 3 weeks ago
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆59Updated last week
- ☆24Updated 3 months ago
- Python workflow for generating benchmark datasets and machine learning models from the MIMIC-IV-ED database.☆84Updated 2 years ago
- 🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datase…☆68Updated this week
- Taking off-the-shelf HuggingFace models and training them on EHR data☆24Updated 2 months ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆93Updated 11 months ago
- ☆67Updated 2 months ago
- A simple set of MEDS polars-based ETL and transformation functions☆30Updated last week
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆35Updated this week
- Repository for the HiRID ICU Benchmark (HiB) project☆54Updated last year
- [ICLR 2025] ACES: Automatic Cohort Extraction System for Event-Streams☆32Updated last week
- Experiments applying FIDDLE on MIMIC-III and eICU. https://doi.org/10.1093/jamia/ocaa139☆24Updated 2 years ago
- Code for BEHRT: Transformer for Electronic Health Records☆109Updated 2 years ago
- source codes based on PyTorch to analyze EHR☆136Updated last year
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆62Updated last year
- A Multimodal Transformer: Fusing Clinical Notes With Structured EHR Data for Interpretable In-Hospital Mortality Prediction☆31Updated 2 years ago
- Source code for a comprehensive analysis of MTL over EHR timeseries data.☆37Updated 2 years ago
- Dataset and modelling infrastructure for modelling "event streams": sequences of continuous time, multivariate events with complex intern…☆112Updated last month
- ☆21Updated this week
- Limited automatic tabular ML pipelines for generic MEDS datasets.☆17Updated this week
- This repository contains the code used for Temporal Pointwise Convolutional Networks for Length of Stay Prediction in the Intensive Care …☆78Updated 3 weeks ago
- Patient Code & Text Representation Learning☆20Updated last year
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆141Updated 3 weeks ago
- The MEDS Decentralized Extensible Validation (MEDS-DEV) Benchmark: Establishing Reproducibility and Comparability in ML for Health☆26Updated last month
- ☆34Updated last year
- ☆24Updated 5 years ago
- circEWS public code☆68Updated 6 months ago
- This repository contains the code to replicate the data processing, modeling and reporting of our Holistic AI in Medicine (HAIM) Publicat…☆119Updated last year
- General Healthcare Predictive Framework☆17Updated 2 months ago