nliulab / mimic4ed-benchmarkLinks
Python workflow for generating benchmark datasets and machine learning models from the MIMIC-IV-ED database.
β87Updated 3 years ago
Alternatives and similar repositories for mimic4ed-benchmark
Users that are interested in mimic4ed-benchmark are comparing it to the libraries listed below
Sorting:
- π§ͺYet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom dataseβ¦β85Updated 2 weeks ago
- A customizable pipeline for data extraction from MIMIC-IV; now multimodal!β284Updated 3 weeks ago
- Repository for the HiRID ICU Benchmark (HiB) projectβ59Updated 2 years ago
- β80Updated 9 months ago
- This repository contains the code to replicate the data processing, modeling and reporting of our Holistic AI in Medicine (HAIM) Publicatβ¦β140Updated 3 months ago
- source codes based on PyTorch to analyze EHRβ147Updated last year
- circEWS public codeβ74Updated last year
- β31Updated 3 years ago
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims dataβ90Updated last month
- AmsterdamUMCdb - Freely Accessible ICU database. Please access our Open Access manuscript at https://doi.org/10.1097/CCM.0000000000004916β191Updated last month
- Code for BEHRT: Transformer for Electronic Health Recordsβ118Updated 2 years ago
- FlexIble Data-Driven pipeLinE β a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algoβ¦β97Updated 5 months ago
- β38Updated 2 years ago
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health recordβ¦β159Updated last week
- Experiments applying FIDDLE on MIMIC-III and eICU. https://doi.org/10.1093/jamia/ocaa139β25Updated 3 years ago
- A Multimodal Transformer: Fusing Clinical Notes With Structured EHR Data for Interpretable In-Hospital Mortality Predictionβ36Updated 3 years ago
- Training HuggingFace models on EHR dataβ34Updated last month
- β45Updated 2 years ago
- TemporAI: ML-centric Toolkit for Medical Time Seriesβ125Updated last year
- A collection of ETLs from common data formats to Medical Event Data Standardβ37Updated 4 months ago
- OMOP standardization pipeline for ICU databasesβ44Updated 9 months ago
- β28Updated 5 years ago
- Code and website related to the eICU Collaborative Research Databaseβ366Updated 11 months ago
- MIMIC-Extract:A Data Extraction, Preprocessing, and Representation Pipeline for MIMIC-IIIβ459Updated last year
- β27Updated 6 months ago
- A simple set of MEDS polars-based ETL and transformation functionsβ38Updated 2 weeks ago
- β18Updated last year
- This repository contains the code used for Temporal Pointwise Convolutional Networks for Length of Stay Prediction in the Intensive Care β¦β82Updated 7 months ago
- β30Updated 10 months ago
- [ICLR 2025] ACES: Automatic Cohort Extraction System for Event-Streamsβ38Updated 2 months ago