nliulab / mimic4ed-benchmarkLinks
Python workflow for generating benchmark datasets and machine learning models from the MIMIC-IV-ED database.
☆83Updated 2 years ago
Alternatives and similar repositories for mimic4ed-benchmark
Users that are interested in mimic4ed-benchmark are comparing it to the libraries listed below
Sorting:
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆94Updated last year
- 🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datase…☆72Updated this week
- Repository for the HiRID ICU Benchmark (HiB) project☆57Updated last year
- Experiments applying FIDDLE on MIMIC-III and eICU. https://doi.org/10.1093/jamia/ocaa139☆24Updated 2 years ago
- This repository contains the code to replicate the data processing, modeling and reporting of our Holistic AI in Medicine (HAIM) Publicat…☆123Updated 2 years ago
- circEWS public code☆69Updated 7 months ago
- ☆72Updated 3 months ago
- source codes based on PyTorch to analyze EHR☆140Updated last year
- A customizable pipeline for data extraction from MIMIC-IV.☆235Updated last year
- Code for BEHRT: Transformer for Electronic Health Records☆111Updated 2 years ago
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆62Updated last month
- A Multimodal Transformer: Fusing Clinical Notes With Structured EHR Data for Interpretable In-Hospital Mortality Prediction☆33Updated 2 years ago
- Training HuggingFace models on EHR data☆26Updated 3 weeks ago
- ☆34Updated 2 years ago
- ☆24Updated 5 years ago
- AmsterdamUMCdb - Freely Accessible ICU database. Please access our Open Access manuscript at https://doi.org/10.1097/CCM.0000000000004916☆178Updated 5 months ago
- OMOP standardization pipeline for ICU databases☆42Updated 4 months ago
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆35Updated last month
- ☆26Updated 4 months ago
- ☆39Updated last year
- A collection of ETLs from common data formats to Medical Event Data Standard☆31Updated 2 weeks ago
- ☆31Updated 2 years ago
- [ICLR 2025] ACES: Automatic Cohort Extraction System for Event-Streams☆33Updated 2 weeks ago
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆144Updated this week
- Targeted-BEHRT: Deep Learning for Observational Causal Inference on Longitudinal Electronic Health Records☆20Updated 2 years ago
- ☆21Updated 2 weeks ago
- This repository contains the code used for Temporal Pointwise Convolutional Networks for Length of Stay Prediction in the Intensive Care …☆78Updated 2 months ago
- TemporAI: ML-centric Toolkit for Medical Time Series☆117Updated last year
- Patient Code & Text Representation Learning☆20Updated 2 years ago
- ☆17Updated last year