nliulab / mimic4ed-benchmarkLinks
Python workflow for generating benchmark datasets and machine learning models from the MIMIC-IV-ED database.
β87Updated 3 years ago
Alternatives and similar repositories for mimic4ed-benchmark
Users that are interested in mimic4ed-benchmark are comparing it to the libraries listed below
Sorting:
- π§ͺYet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom dataseβ¦β88Updated 3 weeks ago
- A customizable pipeline for data extraction from MIMIC-IV; now multimodal!β288Updated last month
- source codes based on PyTorch to analyze EHRβ147Updated last year
- β82Updated 9 months ago
- Repository for the HiRID ICU Benchmark (HiB) projectβ58Updated 2 years ago
- This repository contains the code to replicate the data processing, modeling and reporting of our Holistic AI in Medicine (HAIM) Publicatβ¦β139Updated 3 months ago
- Code for BEHRT: Transformer for Electronic Health Recordsβ119Updated 2 years ago
- FlexIble Data-Driven pipeLinE β a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algoβ¦β97Updated 6 months ago
- circEWS public codeβ74Updated last year
- β46Updated 2 years ago
- AmsterdamUMCdb - Freely Accessible ICU database. Please access our Open Access manuscript at https://doi.org/10.1097/CCM.0000000000004916β192Updated last month
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims dataβ93Updated last month
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health recordβ¦β161Updated 2 weeks ago
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasksβ44Updated 2 weeks ago
- Code and website related to the eICU Collaborative Research Databaseβ369Updated last year
- A Multimodal Transformer: Fusing Clinical Notes With Structured EHR Data for Interpretable In-Hospital Mortality Predictionβ36Updated 3 years ago
- OMOP standardization pipeline for ICU databasesβ44Updated 10 months ago
- β31Updated 3 years ago
- Experiments applying FIDDLE on MIMIC-III and eICU. https://doi.org/10.1093/jamia/ocaa139β24Updated 3 years ago
- β37Updated 2 years ago
- β30Updated 11 months ago
- Training HuggingFace models on EHR dataβ37Updated last month
- A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)β205Updated 6 months ago
- A collection of ETLs from common data formats to Medical Event Data Standardβ37Updated 4 months ago
- This repository contains the code used for Temporal Pointwise Convolutional Networks for Length of Stay Prediction in the Intensive Care β¦β82Updated 8 months ago
- public code repository for paper "Health system scale language models are general purpose clinical prediction engines"β120Updated 2 years ago
- TemporAI: ML-centric Toolkit for Medical Time Seriesβ126Updated 2 years ago
- Med-BERT, contextualized embedding model for structured EHR dataβ311Updated last year
- β27Updated 5 years ago
- β18Updated last week