JSybrandt / agathaLinks
AGATHA: Automatic Graph-mining And Transformer based Hypothesis generation Approach
☆59Updated 5 years ago
Alternatives and similar repositories for agatha
Users that are interested in agatha are comparing it to the libraries listed below
Sorting:
- Multimodal Transformers for biomedical text and Knowledge Graph data☆34Updated 2 years ago
- Using pretrained language models for biomedical knowledge graph completion.☆47Updated 3 years ago
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Updated 4 years ago
- ☆33Updated 6 years ago
- ☆41Updated 5 years ago
- A python implementation of the Ensemble Biclustering for Classification (EBC) algorithm. EBC is a co-clustering algorithm that allows you…☆20Updated 8 years ago
- Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work …☆102Updated 5 years ago
- Automatic generation of reviews of scientific papers☆31Updated 3 months ago
- A biologically inspired method to create sparse, binary word vectors☆38Updated 3 years ago
- DeepDive Biomedical Tools☆14Updated 8 years ago
- COVID-19 Knowledge Graph: a computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiology☆44Updated 4 years ago
- Hyperbolic (Poincare, Lorentz) Embeddings for TensorFlow☆55Updated 6 years ago
- ☆37Updated 7 years ago
- Visualization Tool for Mapping Out Researchers using Natural Language Processing☆56Updated last year
- Notebooks in support of the UMAP paper☆44Updated 3 years ago
- Platform enabling Rapid Annotation for Clinical Entity Recognition☆50Updated 3 years ago
- Hierarchical graph clustering☆38Updated 7 years ago
- Model for learning document embeddings along with their uncertainties☆35Updated last year
- COVID-19 corpus with annotated biomedical entities.☆11Updated 4 years ago
- GLaRA: Graph-based Labeling Rule Augmentation for Weakly Supervised Named Entity Recognition☆31Updated 3 years ago
- Finds linguistic patterns effortlessly☆37Updated last year
- Easy-to-use text representations extraction library based on the Transformers library.☆32Updated 2 years ago
- Medical Relations and Entities Extraction☆36Updated 3 years ago
- Medical Similarity Dataset creation from SNOMED☆28Updated 3 years ago
- Extracting scientific claims from biomedical abstracts (powered by AllenNLP)☆144Updated 4 years ago
- Deep Graph Mapper: Seeing Graphs through the Neural Lens☆58Updated 2 years ago
- a module to calculate the MeSH similarity☆26Updated 4 years ago
- MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)☆19Updated 2 years ago
- Bio relation extraction labeled dataset☆45Updated 3 years ago
- This repository contains the code accompanying the paper "Learning Informative Representations of Biomedical Relations with Latent Variab…☆14Updated 3 years ago