JSybrandt / agatha
AGATHA: Automatic Graph-mining And Transformer based Hypothesis generation Approach
☆56Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for agatha
- ☆40Updated 4 years ago
- Extracting scientific claims from biomedical abstracts (powered by AllenNLP)☆140Updated 3 years ago
- The Automatic Biomedical Hypothesis Generation System.☆21Updated 4 years ago
- A python implementation of the Ensemble Biclustering for Classification (EBC) algorithm. EBC is a co-clustering algorithm that allows you…☆20Updated 7 years ago
- Extracting biomedical relationships from literature with Snorkel 🏊☆59Updated 3 years ago
- Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work …☆102Updated 4 years ago
- This repository contains the code accompanying the paper "Learning Informative Representations of Biomedical Relations with Latent Variab…☆14Updated 3 years ago
- Multimodal Transformers for biomedical text and Knowledge Graph data☆32Updated last year
- COVID-19 Knowledge Graph: a computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiology☆45Updated 3 years ago
- 📊 Results from the reproducibility and benchmarking studies presented in "Bringing Light Into the Dark: A Large-scale Evaluation of Know…☆35Updated 2 years ago
- Code and examples for "Learning on Knowledge Graph Dynamics Provides Early Warning of Impactful Research".☆66Updated 2 years ago
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…☆46Updated 2 years ago
- Retrieve and process PubTator annotations☆43Updated last year
- Using pretrained language models for biomedical knowledge graph completion.☆46Updated 3 years ago
- Repository for student projects within biomedical text mining from Lund University☆51Updated last year
- Named Entity Recognition for biomedical entities☆47Updated last year
- BioFLAIR: Pretrained Pooled Contextualized Embeddings for Biomedical Sequence Labeling Tasks☆41Updated 4 years ago
- a module to calculate the MeSH similarity☆25Updated 3 years ago
- SNP Extraction Tool for Human Variations☆27Updated 9 months ago
- Abbreviation definition dection library trained on PubMed abstracts☆45Updated 4 years ago
- Hetnets in Python (relocated from dhimmel/hetio)☆93Updated last year
- Deep Graph Mapper: Seeing Graphs through the Neural Lens☆54Updated last year
- ☆70Updated 11 months ago
- COVID-19 corpus with annotated biomedical entities.☆11Updated 3 years ago
- ☆32Updated 6 years ago
- A biologically inspired method to create sparse, binary word vectors☆37Updated 2 years ago
- Hyperbolic (Poincare, Lorentz) Embeddings for TensorFlow☆56Updated 5 years ago
- TwiMed: Twitter and PubMed Comparable Corpus of Drugs, Diseases, Symptoms and their Relations☆11Updated 7 years ago
- Python library for working with BioC files☆13Updated 6 years ago
- Hierarchical graph clustering☆37Updated 6 years ago