JSybrandt / agathaLinks
AGATHA: Automatic Graph-mining And Transformer based Hypothesis generation Approach
β59Updated 5 years ago
Alternatives and similar repositories for agatha
Users that are interested in agatha are comparing it to the libraries listed below
Sorting:
- Extracting biomedical relationships from literature with Snorkel πβ58Updated 4 years ago
- A python implementation of the Ensemble Biclustering for Classification (EBC) algorithm. EBC is a co-clustering algorithm that allows youβ¦β20Updated 8 years ago
- Multimodal Transformers for biomedical text and Knowledge Graph dataβ34Updated 2 years ago
- Hetnets in Python (relocated from dhimmel/hetio)β98Updated 2 years ago
- Extracting scientific claims from biomedical abstracts (powered by AllenNLP)β144Updated 4 years ago
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://giβ¦β45Updated 2 years ago
- Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work β¦β102Updated 5 years ago
- a module to calculate the MeSH similarityβ26Updated 4 years ago
- The Automatic Biomedical Hypothesis Generation System.β22Updated 5 years ago
- β33Updated 7 years ago
- Platform enabling Rapid Annotation for Clinical Entity Recognitionβ50Updated 3 years ago
- Notebooks in support of the UMAP paperβ44Updated 3 years ago
- Deep Graph Mapper: Seeing Graphs through the Neural Lensβ58Updated 2 years ago
- Hyperbolic (Poincare, Lorentz) Embeddings for TensorFlowβ55Updated 6 years ago
- Retrieve and process PubTator annotationsβ44Updated last year
- Hierarchical graph clusteringβ38Updated 7 years ago
- COVID-19 corpus with annotated biomedical entities.β11Updated 4 years ago
- Vectorizers for a range of different data typesβ102Updated 6 months ago
- Grounding of biomedical named entities with contextual disambiguationβ45Updated 2 weeks ago
- TigerLily: Finding drug interactions in silico with the Graph.β99Updated 2 years ago
- Code and examples for "Learning on Knowledge Graph Dynamics Provides Early Warning of Impactful Research".β68Updated 2 years ago
- INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databβ¦β196Updated this week
- Medical Similarity Dataset creation from SNOMEDβ28Updated 3 years ago
- COVID-19 Knowledge Graph: a computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiologyβ44Updated 4 years ago
- Embed arbitrary graphs in Hyperbolic spaceβ74Updated 3 years ago
- Using pretrained language models for biomedical knowledge graph completion.β47Updated 3 years ago
- β37Updated 7 years ago
- CascadER: Cross-Modal Cascading for Knowledge Graph Link Prediction (arXiv 22)β13Updated 3 years ago
- Readings for "A Unified View of Relational Deep Learning for Drug Pair Scoring." (IJCAI 2022)β96Updated 3 years ago
- Knowledge graphs generation from unstructured text.β71Updated 6 months ago