JSybrandt / agatha
AGATHA: Automatic Graph-mining And Transformer based Hypothesis generation Approach
☆56Updated 4 years ago
Alternatives and similar repositories for agatha:
Users that are interested in agatha are comparing it to the libraries listed below
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Updated 4 years ago
- A python implementation of the Ensemble Biclustering for Classification (EBC) algorithm. EBC is a co-clustering algorithm that allows you…☆20Updated 7 years ago
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…☆45Updated 2 years ago
- Multimodal Transformers for biomedical text and Knowledge Graph data☆33Updated last year
- ☆40Updated 4 years ago
- The Automatic Biomedical Hypothesis Generation System.☆21Updated 4 years ago
- Extracting scientific claims from biomedical abstracts (powered by AllenNLP)☆141Updated 3 years ago
- 📊 Results from the reproducibility and benchmarking studies presented in "Bringing Light Into the Dark: A Large-scale Evaluation of Know…☆35Updated 2 years ago
- Abbreviation definition dection library trained on PubMed abstracts☆45Updated 4 years ago
- COVID-19 Knowledge Graph: a computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiology☆44Updated 3 years ago
- a module to calculate the MeSH similarity☆25Updated 3 years ago
- This repository contains the code accompanying the paper "Learning Informative Representations of Biomedical Relations with Latent Variab…☆14Updated 3 years ago
- Named Entity Recognition for biomedical entities☆47Updated 2 years ago
- Deep Graph Mapper: Seeing Graphs through the Neural Lens☆55Updated last year
- ☆71Updated last year
- Using pretrained language models for biomedical knowledge graph completion.☆46Updated 3 years ago
- Repository for student projects within biomedical text mining from Lund University☆51Updated last year
- Bio relation extraction labeled dataset☆43Updated 2 years ago
- Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work …☆102Updated 4 years ago
- Retrieve and process PubTator annotations☆44Updated last year
- Collection of public APIs for embedding scientific papers☆56Updated 4 years ago
- BioFLAIR: Pretrained Pooled Contextualized Embeddings for Biomedical Sequence Labeling Tasks☆41Updated 4 years ago
- INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and datab…☆184Updated this week
- ☆37Updated 7 years ago
- A neural named entity recognition and multi-type normalization tool for biomedical text mining☆176Updated 2 years ago
- The need to understand cell developmental processes has spawned a plethora of computational methods for discovering hierarchies from scRN…☆147Updated 3 years ago
- Readings for "A Unified View of Relational Deep Learning for Drug Pair Scoring." (IJCAI 2022)☆90Updated 2 years ago
- Grounding of biomedical named entities with contextual disambiguation☆41Updated 3 months ago
- Hetnets in Python (relocated from dhimmel/hetio)☆94Updated last year
- A biologically inspired method to create sparse, binary word vectors☆37Updated 3 years ago