Learn-Ventures / trdesign-pytorchLinks
pytorch implementation of trDesign
☆45Updated 4 years ago
Alternatives and similar repositories for trdesign-pytorch
Users that are interested in trdesign-pytorch are comparing it to the libraries listed below
Sorting:
- Implementation of Geometric Vector Perceptron, a simple circuit for 3d rotation equivariance for learning over large biomolecules, in Pyt…☆75Updated 4 years ago
- Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design☆83Updated 4 years ago
- This repository contains code for reproducing results in our paper Interpreting Potts and Transformer Protein Models Through the Lens of …☆58Updated 3 years ago
- Replication attempt for the Protein Folding Model described in https://www.biorxiv.org/content/10.1101/2021.08.02.454840v1☆37Updated 3 years ago
- Implementation of Denoising Diffusion for protein design, but using the new Equiformer (successor to SE3 Transformers) with some addition…☆56Updated 2 years ago
- RITA is a family of autoregressive protein models, developed by LightOn in collaboration with the OATML group at Oxford and the Debora Ma…☆98Updated 2 years ago
- To be a next-generation DL-based phenotype prediction from genome mutations.☆19Updated 4 years ago
- Implementation and replication of ProGen, Language Modeling for Protein Generation, in Jax☆112Updated 4 years ago
- Implementation of Invariant Point Attention, used for coordinate refinement in the structure module of Alphafold2, as a standalone Pytorc…☆168Updated 2 years ago
- Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…☆89Updated 3 years ago
- Implementation of Tranception, an attention network, paired with retrieval, that is SOTA for protein fitness prediction☆32Updated 3 years ago
- Pytorch reimplementation of Molecule Attention Transformer, which uses a transformer to tackle the graph-like structure of molecules☆58Updated 4 years ago
- ☆10Updated 4 years ago
- ☆25Updated 3 years ago
- ☆34Updated 5 years ago
- Implementation of Nvidia's NeuralPlexer, for end-to-end differentiable design of functional small-molecules and ligand-binding proteins, …☆51Updated last year
- Energy-based models for atomic-resolution protein conformations☆100Updated 3 years ago
- A tool for predicting the effects of missense mutations on protein stability changes upon missense mutation using protein sequence only. …☆23Updated 2 years ago
- ☆34Updated 5 months ago
- Code for Fold2Seq paper from ICML 2021☆50Updated 3 years ago
- PyTorch library of layers acting on protein representations☆119Updated last year
- Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch☆158Updated 2 years ago
- ☆132Updated 3 years ago
- Implementation of the Triangle Multiplicative module, used in Alphafold2 as an efficient way to mix rows or columns of a 2d feature map, …☆36Updated 4 years ago
- Open source code for AlphaFold to extract protein embeddings☆27Updated 4 years ago
- A repository with exploration into using transformers to predict DNA ↔ transcription factor binding☆85Updated 3 years ago
- Implementation of E(n)-Transformer, which incorporates attention mechanisms into Welling's E(n)-Equivariant Graph Neural Network☆226Updated last year
- The official implementation of Energy-Inspired Molecular Conformation Optimization (ICLR 2022)☆36Updated 3 years ago
- A Modular Architecture for Deep Learning Systems☆45Updated 5 months ago
- Learning protein structure with a differentiable simulator☆27Updated 6 years ago