JasonYangShadow / lpmx

Related projects ⓘ

Alternatives and complementary repositories for lpmx

• sapporo-wes / sapporo-service
  A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specific…
  ☆21Updated last month
• onecodex / finch-rs
  A genomic minhashing implementation in Rust
  ☆93Updated 10 months ago
• yachielab / FRACTAL
  FRACTAL: framework for distributed computing to trace large accurate lineages
  ☆24Updated 2 years ago
• grailbio / bio
  Bioinformatic infrastructure libraries
  ☆77Updated 4 years ago
• dnbaker / bonsai
  Bonsai: Fast, flexible taxonomic analysis and classification
  ☆70Updated 7 months ago
• vatlab / varianttools
  software tool for the manipulation, annotation, selection, and analysis of variants in the context of next-gen sequencing analysis
  ☆31Updated 2 years ago
• splatlab / debgr
  deBGR: An Efficient and Near-Exact Representation of the Weighted de Bruijn Graph
  ☆30Updated 3 years ago
• BioContainers / mulled
  Mulled - Automatized Containerized Software Repository
  ☆65Updated 8 months ago
• VertebrateResequencing / wr
  High performance Workflow Runner
  ☆30Updated last month
• otiai10 / hotsub
  Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources
  ☆30Updated 6 years ago
• johanneskoester / alpaca
  ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algeb…
  ☆23Updated this week
• ekg / fastahack
  utilities for indexing and sequence extraction from FASTA files
  ☆59Updated 3 years ago
• Picani / fastax
  Make phylogenetic trees and lineages from the NCBI Taxonomy database
  ☆13Updated last year
• angelovangel / faster
  A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
  ☆29Updated 6 months ago
• dnanexus / dxfuse
  FUSE filesystem for the DNAnexus storage system
  ☆14Updated last week
• ncbi / pm4ngs
  Project Manager for NGS data analysis
  ☆27Updated 2 years ago
• jorvis / GALES
  Genomic Annotation Logic and Execution System
  ☆9Updated last year
• mbhall88 / ssubmit
  Submit slurm sbatch jobs without a script
  ☆65Updated 2 months ago
• ncbi / magicblast
  ☆35Updated last year
• dnanexus / dxWDL
  Workflow Description Language compiler for the DNAnexus platform
  ☆40Updated last year
• marcelm / dnaio
  Efficiently read and write sequencing data from Python
  ☆62Updated last week
• arshajii / ema
  Fast & accurate alignment of barcoded short-reads
  ☆32Updated last year
• jltsiren / gbwt
  Substring index for paths in a graph
  ☆60Updated 2 weeks ago
• splatlab / squeakr
  Squeakr: An Exact and Approximate k -mer Counting System
  ☆85Updated 9 months ago
• biogo / hts
  biogo high throughput sequencing repository
  ☆125Updated 7 months ago
• annalam / seqkit
  Toolkit for manipulating FASTA and SAM files
  ☆17Updated 8 months ago
• google / best
  Bam Error Stats Tool (best): analysis of error types in aligned reads.
  ☆126Updated 8 months ago
• Nazeeefa / awesome-sequencing-tech-papers
  A collection of publications on comparison of high-throughput sequencing technologies.
  ☆26Updated 6 months ago
• will-rowe / hulk
  Histosketching Using Little Kmers
  ☆55Updated last year
• opencb / hpg-aligner
  HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment
  ☆34Updated 7 years ago