HarrisonSteel / ChiBio
ChiBio primary operating system.
☆23Updated 4 months ago
Related projects: ⓘ
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆33Updated 5 years ago
- A high-fidelity E. coli RNA-seq compendium☆32Updated 3 years ago
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆50Updated last year
- Enzyme-constrained genome-scale models in python☆25Updated 10 months ago
- Enumerating biosynthetic pathways in metabolic networks☆11Updated last year
- ReFramed: metabolic modeling package☆53Updated last month
- ☆30Updated 3 weeks ago
- 🤖 Python biolab automation library: parsers, report generators, picklist simulators, and more☆41Updated 2 years ago
- Computation of Microbial Ecosystems in Time and Space☆19Updated this week
- A Python package for mapping sequence aligned data onto protein structures☆34Updated 3 years ago
- Python framework for doing ancestral sequence reconstruction☆32Updated 2 months ago
- 🎨 Python library to plot multi-part genetic constructs☆25Updated last year
- ☆24Updated last week
- Toolkit for Modelling and Simulation of Gene Expressions and Metabolism☆12Updated 4 months ago
- Interpretable genotype-phenotype landscape modeling☆33Updated 9 months ago
- METIS: A versatile active learning workflow for optimization of genetic and metabolic networks☆26Updated last year
- Webserver and command line tool for annotating engineered plasmids☆12Updated last year
- Read DNA sequences from colourful Microsoft Word documents☆32Updated last year
- ☆22Updated 4 years ago
- Python wrapper to design RNA molecules using RNAblueprint, RNARedPrint and for energy evaluations ViennaRNA, Hotknots, pKiss and Nupack.☆18Updated 6 years ago
- General low-level API☆47Updated 2 years ago
- Dynamic FBA for use with COBRApy metabolic models☆10Updated 11 months ago
- Generated color schemes for sequence alignment visualizations☆16Updated 2 years ago
- A route planner for DNA assembly☆29Updated 11 months ago
- Find common blocks and differences between DNA sequences☆38Updated 2 years ago
- teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, …☆34Updated 3 weeks ago
- Desktop tool for microbial genome annotation and gene detection☆12Updated 3 years ago
- ☆20Updated 8 months ago
- A package for making tree-based visualizations for embedding vectors☆9Updated last year
- Nanopore Plasmid Sequencing☆30Updated 11 months ago