HarrisonSteel / ChiBioLinks
ChiBio primary operating system.
β28Updated last year
Alternatives and similar repositories for ChiBio
Users that are interested in ChiBio are comparing it to the libraries listed below
Sorting:
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)β35Updated 7 years ago
- π€ Python biolab automation library: parsers, report generators, picklist simulators, and moreβ46Updated 7 months ago
- D3.js based visualizations of cobrapy metabolic modelsβ50Updated 5 years ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApyβ47Updated last month
- Enzyme-constrained genome-scale models in pythonβ30Updated 2 years ago
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assembliesβ64Updated 8 months ago
- cameo - computer aided metabolic engineering & optimizationβ122Updated 3 years ago
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced featβ¦β61Updated last month
- β23Updated 5 years ago
- General low-level APIβ50Updated 3 years ago
- A high-fidelity E. coli RNA-seq compendiumβ33Updated 4 years ago
- framed: a metabolic modeling package for pythonβ26Updated 6 years ago
- A route planner for DNA assemblyβ36Updated 8 months ago
- ReFramed: metabolic modeling packageβ63Updated 4 months ago
- Mackinac: A bridge between ModelSEED and COBRApyβ19Updated 7 years ago
- QUEEN: a framework to generate quinable and efficiently editable nucleotide sequence resourcesβ45Updated last month
- Python package for creating, calibrating and simulating RBA modelsβ13Updated 2 years ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental dataβ27Updated 2 years ago
- The Ribosome Binding Site (RBS) Calculator can predict the translation initiation rate of a protein coding sequence in bacteria and desigβ¦β60Updated 10 years ago
- Toolbox for including enzyme constraints on a genome-scale model.β79Updated 2 months ago
- Release of the whole cell E. coli model.β74Updated last year
- Python Implementation of Codon Adaption Indexβ37Updated 2 years ago
- Interpretable genotype-phenotype landscape modelingβ36Updated 2 years ago
- A python wrapper for the benchling apiβ50Updated 5 years ago
- Nanopore Plasmid Sequencingβ34Updated 2 years ago
- A Python framework for structural systems biologyβ110Updated 5 years ago
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno approβ¦β65Updated 2 weeks ago
- Repository of tutorials for The COBRA Toolboxβ24Updated 2 weeks ago
- β26Updated 3 years ago
- Enzyme models that take into account kinetics, allostery and thermodynamicsβ27Updated last year