Alternatives and similar repositories for gillespy:

Users that are interested in gillespy are comparing it to the libraries listed below

• quantumbrake / cayenne
  Python package for stochastic simulations
  ☆17Updated last week
• matthiaskoenig / dfba
  Encoding Dynamic Flux Balance Analysis in SBML
  ☆11Updated 4 years ago
• SystemsBioinformatics / stochpy
  StochPy is a versatile stochastic modeling package which is designed for stochastic simulation of molecular control networks
  ☆40Updated 2 years ago
• WarrenWeckesser / heatmapcluster
  A python library for generating a clustered heatmap with dendrograms.
  ☆31Updated 2 years ago
• darrenjw / smfsb
  Documentation, models and code relating to the 3rd edition of the textbook Stochastic Modelling for Systems Biology
  ☆32Updated 3 weeks ago
• KarrLab / intro_to_wc_modeling
  Whole-cell modeling tutorials
  ☆16Updated 4 years ago
• opencobra / driven
  Data-Driven Constraint-based analysis
  ☆12Updated 2 years ago
• biokit / biokit
  Bioinformatics in Python
  ☆58Updated 8 months ago
• vals / scilife-python-course
  ☆20Updated 12 years ago
• pstjohn / dFBA
  Dynamic Flux Balance analysis in Python
  ☆11Updated 9 years ago
• AlonLabWIS / ParTI
  A Matlab package to perform Pareto Task Inference (ParTI), which infers tasks from high-dimensional datasets.
  ☆12Updated 5 years ago
• biosustain / croissance
  Tool for estimating growth rates from microbial growth curves
  ☆28Updated 3 years ago
• lanl / PyBNF
  An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…
  ☆24Updated last year
• PriceLab / probannopy
  A python package for Probanno!
  ☆9Updated 4 years ago
• dmnfarrell / pybioviz
  bioinformatics visualization tools with pyviz/bokeh
  ☆20Updated last year
• tiagoantao / data-science-teaching
  Teaching data science
  ☆8Updated 8 years ago
• sbmlteam / python-libsbml
  Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.
  ☆22Updated 4 months ago
• Edinburgh-Genome-Foundry / BandWagon
  🎺 Plot DNA digestion band patterns with Python
  ☆19Updated 2 years ago
• harmslab / epistasis
  A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.
  ☆34Updated last year
• brentp / fishers_exact_test
  Fishers Exact Test for Python (Cython)
  ☆64Updated 6 months ago
• Edinburgh-Genome-Foundry / Primavera
  Python library for primer-based verification of DNA assemblies: primer selection, data analyis, etc.
  ☆33Updated 2 years ago
• mgalardini / python_plotting_snippets
  Tips and tricks for plotting in python
  ☆28Updated 6 years ago
• johnbarton / ACE
  Fast and flexible code for solving the inverse Ising/Potts inference problem
  ☆26Updated last year
• alubbock / microbench
  Benchmarking and metadata tracking for Python. Extensible, with distributed/cluster support.
  ☆16Updated 6 months ago
• YeoLab / flotilla
  Reproducible machine learning analysis of gene expression and alternative splicing data
  ☆127Updated last year
• ManchesterBioinference / BranchedGP
  Branching Gaussian process
  ☆28Updated last year
• ska-sa / scikits.fitting
  ☆14Updated last year
• cavaunpeu / gaussian-processes
  A thorough, straightforward, un-intimidating introduction to Gaussian processes in NumPy.
  ☆16Updated 6 years ago
• pirl-unc / mhcgnomes
  Parsing MHC nomenclature in the wild
  ☆16Updated 4 months ago
• willtownes / glmpca-py
  generalized principal component analysis (GLM-PCA) implemented in python
  ☆58Updated 4 years ago