GillesPy / gillespyLinks
Deprecated: please use GillesPy2
☆12Updated 6 years ago
Alternatives and similar repositories for gillespy
Users that are interested in gillespy are comparing it to the libraries listed below
Sorting:
- Python framework for Systems Biology modeling☆189Updated 6 months ago
- Python package for stochastic simulations☆18Updated last week
- Mackinac: A bridge between ModelSEED and COBRApy☆19Updated 7 years ago
- Bioinformatics in Python☆58Updated last year
- Reproducible machine learning analysis of gene expression and alternative splicing data☆125Updated 2 years ago
- Python Environment for Modeling and Simulating Biological Systems☆131Updated 2 months ago
- Notebooks to introduce biopython☆141Updated 5 years ago
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆24Updated 2 months ago
- A python library for generating a clustered heatmap with dendrograms.☆34Updated 3 years ago
- framed: a metabolic modeling package for python☆26Updated 6 years ago
- Tool to easily start up an IPython cluster on different schedulers.☆146Updated 5 years ago
- Introduction to Biophysics, requires one semester of calculus-based Physics.☆28Updated 2 years ago
- Dynamic FBA for use with COBRApy metabolic models☆10Updated 2 years ago
- A python package for visualization and analysis of high-throughput flow cytometry data☆127Updated 2 years ago
- Repository of tutorials for The COBRA Toolbox☆24Updated this week
- A Python toolbox for quantitative, reproducible flow cytometry analysis☆212Updated last month
- Python library to simulate evolutionary sequence data☆80Updated 4 years ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Updated 7 years ago
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆123Updated last week
- A Python library for phylogenetic scripting, simulation, data processing and manipulation.☆229Updated last month
- Encoding Dynamic Flux Balance Analysis in SBML☆12Updated 5 years ago
- Tool for estimating growth rates from microbial growth curves☆31Updated this week
- 2nd Annual Undergraduate Quantitative Biology (UQ-bio) Summer School☆16Updated 3 years ago
- GPU-accelerated multicellular modelling framework☆71Updated 9 months ago
- PyCogent: Official repository for software and unit tests☆92Updated 4 years ago
- cameo - computer aided metabolic engineering & optimization☆124Updated 3 years ago
- cy3sbml: SBML for Cytoscape 3☆15Updated 2 weeks ago
- Platform for integrating genomic analysis with Jupyter Notebooks.☆44Updated 6 months ago
- Welcome to the University of Toronto Coders!☆101Updated 2 weeks ago
- SWIG-Python wrappers implementing SBOL 2.2☆25Updated 4 years ago