A Python script to map PDB ID + chain ID to UniProt ID.
☆18Mar 7, 2024Updated 2 years ago
Alternatives and similar repositories for pdb2uniprot
Users that are interested in pdb2uniprot are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing☆21Nov 18, 2025Updated 6 months ago
- Transformer for protein function prediction (version 2)☆14Jan 8, 2026Updated 4 months ago
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆15Jul 25, 2023Updated 2 years ago
- DomainMapper is a parser for hmmscan full output files built centrally around ECOD domain definitions. Users can optimize DomainMapper's …☆13Dec 13, 2023Updated 2 years ago
- GO2Sum is a deep learning based summarizer that generates human-readable summaries for GO term annotations made by protein function predi…☆16Mar 27, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- NMR structure elucidation☆22Jun 16, 2025Updated 11 months ago
- PDBe Programming Interfaces information☆14Jul 23, 2018Updated 7 years ago
- Python scripts for molecular docking of molecules vs DUDE protein targets, using Vina☆24Apr 20, 2020Updated 6 years ago
- A geometric deep learning method for refining and assessing protein complex structures.☆16Oct 22, 2022Updated 3 years ago
- Biobb_amber is a BioBB category for AMBER MD package.☆14May 22, 2026Updated last week
- Protein Structure Transformer (PST): Endowing pretrained protein language models with structural knowledge☆46Oct 17, 2024Updated last year
- Examples of projects using Arduino and ESP8266☆13Oct 6, 2014Updated 11 years ago
- Water Network-Augmented Two-State model for Protein−Ligand Binding Affinity Prediction☆12Jun 10, 2023Updated 2 years ago
- https://grasp.ufv.br/☆17Jul 6, 2023Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Main repository for the CP-PAW code☆12Apr 29, 2026Updated last month
- A simulation engine for compartmental models☆15May 21, 2026Updated last week
- Artificial intelligence is used in drug development☆18Dec 23, 2019Updated 6 years ago
- Visual Molecular Dynamics in Docker Container☆12Jan 1, 2015Updated 11 years ago
- Some Rosetta Scripts that allow for various simple tasks☆15Jan 27, 2020Updated 6 years ago
- PDB2PQR - determining titration states, adding missing atoms, and assigning charges/radii to biomolecules.☆170Apr 26, 2026Updated last month
- Co-Authorship Network of 402.39K authors on Google Scholar☆16Apr 14, 2020Updated 6 years ago
- Predict binding affinity of ligand-protein complexes using Graph Neural Networks. The model is implemented using PyTorch Geometric and ba…☆11Nov 26, 2022Updated 3 years ago
- Implementation of GTMGC: Using Graph Transformer to Predict Molecule’s Ground-State Conformation (ICLR2024 Spotlight).☆22Mar 26, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Designer scaffolded DNA DX-based wireframe lattices☆14Jul 28, 2018Updated 7 years ago
- Code for the combinatorial synthesis library variational auto-encoder (CSLVAE) as described in the paper, "An efficient graph generative …☆14Nov 17, 2023Updated 2 years ago
- Nested Logit Model with TensorFlow☆12May 11, 2019Updated 7 years ago
- DeepCoSI: a Structure-based Deep Graph Learning Network Method for Covalent Binding Site Identification.☆14Oct 22, 2023Updated 2 years ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆24May 16, 2026Updated 2 weeks ago
- ☆16Jan 5, 2021Updated 5 years ago
- DSSPparser is an easy tool to parse dssp file, and can transform PDB format file to dssp format file by xssp,also support the tansfrom be…☆13Sep 20, 2022Updated 3 years ago
- Download pdb/protein structures using Uniprot id; This script will download related PDB files, extract chains(Optional), remove duplicate…☆46Jul 24, 2024Updated last year
- ☆15Jun 4, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A Deep Learning Framework for Allosteric Site Prediction☆17May 21, 2025Updated last year
- Synthetic Bayesian Classification☆50Jan 18, 2021Updated 5 years ago
- Benchmarking gene embeddings on single, paired, and gene set tasks☆20Nov 29, 2025Updated 6 months ago
- A Python implementation of the direct MaxFlux method for transition state search☆39May 21, 2026Updated last week
- Comparison of principal components analysis with diffusion maps on toy data sets and a molecular simulation trajectory☆17Feb 1, 2017Updated 9 years ago
- This is a Python implementation of the sequence design algorithm DAEDALUS for scaffolded DNA origami☆19May 11, 2026Updated 2 weeks ago
- ☆56Aug 3, 2024Updated last year