aphp / confit
Confit is a complete and easy-to-use configuration framework aimed at improving the reproducibility of experiments by relying on the Python type annotations, minimal configuration files and a robust CLI.
☆11Updated 3 weeks ago
Alternatives and similar repositories for confit
Users that are interested in confit are comparing it to the libraries listed below
Sorting:
- Modular, fast NLP framework, compatible with Pytorch and spaCy, offering tailored support for French clinical notes.☆123Updated last week
- EDS-PDF is a generic, pure-Python framework for text extraction from PDF documents. It provides the machinery to use rule- or machine-lea…☆47Updated 3 months ago
- eds-scikit is a Python library providing tools to process and analyse OMOP data☆40Updated 4 months ago
- PyTorch extension for handling deeply nested sequences of variable length☆10Updated last month
- EDS-Pseudo is a hybrid model for detecting personally identifying entities in clinical reports☆52Updated 3 weeks ago
- Annotator building tool for Jupyter☆22Updated 2 months ago
- ✖️MEN - A Modular Toolkit for Cross-Lingual Medical Entity Normalization☆27Updated 4 months ago
- Fast, world class biomedical NER☆86Updated 2 months ago
- This repository is now archived. Further development has been moved to https://github.com/medkit-lib/medkit.☆23Updated last year
- EMNLP 2022: Biomedical NER for the Enterprise with Distillated BERN2 and the Kazu Framework☆10Updated 8 months ago
- An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…☆43Updated last year
- Biomedical Term Annotator☆9Updated 2 months ago
- Weakly supervised medical named entity classification☆73Updated 2 years ago
- a tool for mapping free-text descriptions of entities to ontology terms☆21Updated 9 months ago
- Software "Disease_ontologies_for_knowledge_graphs" - a knowledge base solution that uses Grakn core and disease ontologies cross-referenc…☆21Updated 4 years ago
- Grounding of biomedical named entities with contextual disambiguation☆43Updated last month
- Auto-CORPus pipeline developed by a University of Nottingham and Imperial College London collaboration to standardize text and table data…☆21Updated this week
- Natural language structuring library☆19Updated 11 months ago
- TypeDB Bio: Biomedical Knowledge Graph☆86Updated 10 months ago
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆40Updated last year
- Repository with code, notebook and slides for my PyData & PyConDE talk 2023 about Clean Coding practises.☆12Updated 2 years ago
- Winners of the SNOMED CT Entity Linking Challenge☆34Updated last year
- A Python library for performing NLP on clinical text written in Dutch☆35Updated 5 months ago
- Running MedCAT as a RESTful web service☆22Updated 2 months ago
- python library for graphical and continuous representations of ICD9 and ICD10 codes☆38Updated 4 months ago
- a customzable pipeline for information extraction☆17Updated 2 months ago
- Text annotation tool for team collaboration☆41Updated last year
- Code that parses datasets from various sources and converts them to load graph databases.☆16Updated 2 weeks ago
- Extract linked metadata from repositories☆11Updated 4 months ago
- ☆24Updated 4 months ago