apache / ctakesLinks
Apache cTAKES is a Natural Language Processing (NLP) platform for clinical text.
☆106Updated last month
Alternatives and similar repositories for ctakes
Users that are interested in ctakes are comparing it to the libraries listed below
Sorting:
- General tutorials for the setup and use of MedCAT.☆40Updated 5 months ago
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆70Updated 5 months ago
- Winners of the SNOMED CT Entity Linking Challenge☆42Updated last year
- FHIR-PYrate is a package that provides a high-level API to query FHIR Servers for bundles of resources and return the structured informat…☆71Updated 2 months ago
- Work on using Retrieval-Augmented Generation (RAG) to combine Fast Healthcare Interoperable Resources (FHIR) with Generative AI.☆110Updated last year
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated 2 years ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆85Updated last month
- Open source clinical text de-identification☆142Updated last year
- Medical Concept Annotation Tool☆511Updated 3 months ago
- Transformers for Clinical NLP☆25Updated 2 months ago
- ETL Tool for converting datasets to OMOP CDM☆33Updated 2 years ago
- all scripts used in gatortron project☆124Updated last year
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…☆70Updated last month
- NLP2FHIR: A FHIR-based Clinical Data Normalization Pipeline and Its Applications☆61Updated 3 years ago
- A Serverless Text Annotation Tool for Corpus Development☆57Updated 8 months ago
- A Model Context Protocol implementation for FHIR☆58Updated last month
- Running MedCAT as a RESTful web service☆21Updated 4 months ago
- A simple python library for ICD-10-CM codes☆75Updated 2 months ago
- ☆18Updated 5 years ago
- LLM Embeddings for ICD 10 Data☆57Updated 10 months ago
- Python package for managing OHDSI clinical data models. Includes support for LLM based plain text queries, MCP server and FHIR import.☆51Updated 2 weeks ago
- A Python library to de-identify medical records with state-of-the-art NLP methods.☆141Updated last year
- A deidentifier / deidentification pipeline developed by Stanford and Penn as part of the MIDRC organization.☆92Updated last year
- Common clinical models in the forms of openEHR archetypes and GDL guidelines☆37Updated this week
- ☆27Updated 4 months ago
- PLM-ICD: Automatic ICD Coding with Pretrained Language Models☆73Updated last year
- A Python Natural Language Processing Toolkit for Medical Text Generation☆83Updated 5 months ago
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆64Updated 4 months ago
- Library for clinical NLP with spaCy.☆607Updated 2 months ago
- An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…☆45Updated last year