pamellaccar / gromacs_plumed_hremdLinks
A step-by-step tutorial to run Molecular Dynamics Simulations with enhanced sampling of a pepitide using PLUMED implemented in GROMACS to perform replica exchanges
☆15Updated last year
Alternatives and similar repositories for gromacs_plumed_hremd
Users that are interested in gromacs_plumed_hremd are comparing it to the libraries listed below
Sorting:
- ☆32Updated last year
- Automated construction of protein chimeras and their analysis.☆15Updated 2 years ago
- An implementation of the AWSEM coarse-grained protein folding forcefield in OpenMM☆37Updated 5 months ago
- Plugin for folding sequences directly in PyMOL☆27Updated 3 months ago
- This repo contains the collection of codes to find designer interfacial mutations☆17Updated 2 years ago
- Python package to manage protein structures and their annotations☆44Updated last year
- Pras Server is a library to repair PDB or mmCIF structures, add missing heavy atoms and hydrogen atoms and assign secondary structure by …☆28Updated 3 months ago
- An implementation of the 3SPN2 and 3SPN2.C coarse-grained DNA forcefields in OpenMM☆19Updated 6 months ago
- ☆45Updated 2 weeks ago
- This repository provides with custom code and analysis scripts to generate structural ensembles of intrinsically disordered proteins by u…☆19Updated 2 weeks ago
- Some notes (cookbook) for pyMol. Protein Crystallography course.☆15Updated 4 years ago
- Explicit crosslinks in AlphaFold 3☆23Updated 8 months ago
- ☆78Updated last month
- Python interface for the RCSB PDB search API.☆65Updated 7 months ago
- ☆21Updated 2 years ago
- This is the public repository for the RING PyMOL plugin developed by the BioComputing UP laboratory at the University of Padua☆30Updated 2 months ago
- Calculation of interatomic interactions in molecular structures☆112Updated last year
- Modelling of Large Protein Complexes☆38Updated 3 months ago
- ☆84Updated 3 weeks ago
- PyMOL-wasm port's binary and html/javascript code☆33Updated 2 months ago
- An open-source library for the analysis of protein interactions.☆32Updated 3 years ago
- A fast and simple Molecular Dynamics tutorial using GROMACS and PACKMOL.☆37Updated 2 years ago
- Molecular Dynamics for Experimentalists☆63Updated last month
- Framework for the rapid modeling glycans and glycoproteins.☆31Updated 2 years ago
- ☆17Updated 2 years ago
- ☆20Updated last year
- A tool for 2D protein visualization aimed at improving the comparability of protein structures through standardized 2D visualizations.☆19Updated 3 months ago
- Kuhlman Lab Installation of AlphaFold3☆37Updated last month
- code and source data for de novo design of Kemp elimination paper☆23Updated 2 months ago
- Kincore-Standalone2 - Python3 code for calculating the conformational state of typical protein kinases☆15Updated 2 years ago