rinikerlab / PyGromosTools
This package is a python library with tools for the Molecular Simulation - Software Gromos. It allows you to easily set up, manage and analyze simulations in python.
☆16Updated last year
Alternatives and similar repositories for PyGromosTools
Users that are interested in PyGromosTools are comparing it to the libraries listed below
Sorting:
- ☆27Updated last week
- ☆35Updated 8 months ago
- Scripts, inputs and the results generated as part of the training the Sage line of OpenFF force fields.☆21Updated last year
- This pipeline is executing a RE-EDS run for relative free energy calculations. It can be used for example for calculation of hydration fr…☆31Updated last month
- Materials for 2023 workshop at CCPBioSim Training Week https://www.ccpbiosim.ac.uk/events/upcoming-events/eventdetail/104/-/training-week☆30Updated last year
- A command line application to launch molecular dynamics simulations with OpenMM☆40Updated 3 years ago
- Advanced toolkit for binding free energy calculations☆32Updated 4 months ago
- The MDAnalysis Toolkits Registry☆17Updated this week
- Package for consistent reporting of relative free energy results☆39Updated 2 weeks ago
- OpenMM scripts for polarisable molecular dynamics with the AMOEBA force field☆24Updated 5 years ago
- An OpenMM plugin that implements the Alchemical Transfer Potential☆40Updated 2 years ago
- Python code for generating Boresch restraints from MD simulations☆20Updated 2 years ago
- Standalone charge assignment from Espaloma framework.☆39Updated 10 months ago
- Recipes and protocols for molecular free energy calculations using the openmmtools/perses and Open Free Energy toolkits☆13Updated 3 weeks ago
- Tool to predict water molecules placement and energy in ligand binding sites☆28Updated last month
- A collections of scripts for working molecular dynamics simulations☆43Updated 11 months ago
- ☆25Updated last year
- Given an RDKit molecule that does not sanitise, correct it until it does☆41Updated last year
- ☆28Updated last week
- Absolute solvation free energy calculations with OpenFF and OpenMM☆22Updated 5 months ago
- mdciao: Accessible Analysis and Visualization of Molecular Dynamics Simulation Data☆33Updated last week
- Set up relative free energy calculations using a common scaffold☆22Updated 3 weeks ago
- Partial Charge assignment for Molecular Dynamics☆20Updated 2 months ago
- This package contains tools for setting up hybrid-topology FE calculations☆28Updated last week
- A python module for flexible Poisson-Boltzmann based pKa calculations with proton tautomerism☆58Updated last year
- A tutorials suite for BioSimSpace.☆25Updated 2 weeks ago
- Ensembler is a python package that provides fast and easy access to 1D and 2D model system simulations. It can be used for method develop…☆53Updated last year
- ☆26Updated last year
- ☆29Updated last year
- A. Alenaizan's restricted electrostatic potential (RESP) plugin to Psi4☆32Updated 5 years ago