Analysis of Molecular Dynamics output in the IPython Notebook
☆10Jan 24, 2017Updated 9 years ago
Alternatives and similar repositories for ipymd
Users that are interested in ipymd are comparing it to the libraries listed below
Sorting:
- An extension to the MDAnalysis library providing support for dealing with structural ensembles. There is currently support for calculatin…☆16Jul 20, 2018Updated 7 years ago
- Coarse-graining library that implements Force-matching☆11Aug 31, 2020Updated 5 years ago
- a quick primer on making prettier (and more impactful) plots☆14Sep 27, 2015Updated 10 years ago
- Molecular kaleidoscope☆15Apr 11, 2018Updated 7 years ago
- Python bindings for TNG file format☆13Oct 14, 2025Updated 4 months ago
- LAMMPS configuration files☆13Jan 11, 2017Updated 9 years ago
- Examples and data for performing path similarity analysis (PSA).☆17Oct 23, 2015Updated 10 years ago
- a logistics and persistence engine for the analysis of molecular dynamics trajectories☆30Jan 24, 2020Updated 6 years ago
- persistent, pythonic trees for heterogeneous data☆33May 20, 2022Updated 3 years ago
- Access to data for workshops and extended tests of MDAnalysis.☆19Sep 25, 2024Updated last year
- MDAnalysis home page mdanalysis.org as GitHub pages.☆14Feb 21, 2026Updated last week
- Python utility functions for the analysis of diffusion in molecular dynamics simulation trajectories.☆18Jun 21, 2022Updated 3 years ago
- MDToolbox: A MATLAB/Octave toolbox for statistical analysis of molecular dynamics trajectories☆26Dec 7, 2019Updated 6 years ago
- Este é um repositório que contem os notebooks do projeto PET.py do PET - Física da UFRN.☆14Updated this week
- A tiny package to compute the dynamics of stochastic and molecular simulations☆33Jul 11, 2023Updated 2 years ago
- User Guide for MDAnalysis☆29Updated this week
- A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association between expressed SNVs with their gene expr…☆10Jan 20, 2022Updated 4 years ago
- A collection of scripts to interpret/organize VASP output files☆24Oct 13, 2016Updated 9 years ago
- Parallel algorithms for MDAnalysis☆31Aug 2, 2024Updated last year
- RADICAL-Pilot☆64Jan 16, 2026Updated last month
- ☆12Updated this week
- Reads Gromacs EDR file to populate a pandas dataframe☆33Oct 12, 2025Updated 4 months ago
- Molecular Dynamics in the Open☆87Updated this week
- A python library for simulating field theories with topological defects☆14Feb 3, 2026Updated 3 weeks ago
- Web scraper for UniProt and iPTMnet database☆10Jul 12, 2018Updated 7 years ago
- AiSurf is an open-source package for analyzing surface microscopy images, based on established computer vision and machine learning techn…☆12Oct 2, 2025Updated 5 months ago
- Python SDK and examples for the RSpace API☆17Oct 29, 2025Updated 4 months ago
- 北京科技大学材料学院材科专业课程资料☆15Feb 29, 2024Updated 2 years ago
- Python wrappers for the FirecREST API☆12Dec 23, 2025Updated 2 months ago
- Quickly generate, start and analyze benchmarks for molecular dynamics simulations.☆80Sep 5, 2024Updated last year
- MD trajectory server☆35Jul 6, 2023Updated 2 years ago
- A C++ software tool for generating and analyzing model bulk heterojunction morphologies in a parallel computing environment☆11Nov 27, 2020Updated 5 years ago
- ☆13Jun 17, 2025Updated 8 months ago
- Gromacs molecular dynamics simulation analysis scripts☆10Apr 5, 2022Updated 3 years ago
- the simple alchemistry test set☆10Nov 20, 2025Updated 3 months ago
- Making life easier using scripting languages (Bash and Python) to facilitate multiple VASP simulation jobs preparation, submission and an…☆13Dec 15, 2014Updated 11 years ago
- Software Suite for Advanced General Ensemble Simulations☆90Feb 24, 2023Updated 3 years ago
- Adaptive Mesh Phase-field Evolution☆41Dec 15, 2025Updated 2 months ago
- Atomistic Manipulation Toolkit☆94Aug 4, 2025Updated 6 months ago