Official implementation of the paper: Narotamo, H., Silveira, M., & Franco, C. A. (2024). 3DVascNet: An Automated Software for Segmentation and Quantification of Mouse Vascular Networks in 3D. Arteriosclerosis, Thrombosis, and Vascular Biology.
☆10Jan 21, 2025Updated last year
Alternatives and similar repositories for 3DVascNet
Users that are interested in 3DVascNet are comparing it to the libraries listed below
Sorting:
- img2vid☆21Dec 14, 2022Updated 3 years ago
- MEDPSeg: Official implementation of Modified EfficientDet for Pulmonary Polymorphic Segmentation☆26Feb 14, 2026Updated 2 weeks ago
- A MATLAB implementation of the skeletal similarity metric for quality evaluation of vessel segmentation.☆21Oct 24, 2018Updated 7 years ago
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning☆76Aug 23, 2021Updated 4 years ago
- Metaprompt is an AI-powered prompt generator developed by Anthropic. This is the unofficial Metaprompt Community Github repo. All PRs are…☆13Mar 19, 2024Updated last year
- Structured reporting platform for radiologists☆10Dec 17, 2021Updated 4 years ago
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11May 14, 2021Updated 4 years ago
- Implementation of the DeepVesselNet deep learning network☆156Jul 7, 2023Updated 2 years ago
- Code related to Swanson, et. al. for TEA-seq, ICICLE-seq, and scATAC-seq data processing, analysis, and visualization☆13Sep 20, 2021Updated 4 years ago
- Prototype implementation of napari-integrated CNN training viewer☆14Dec 27, 2024Updated last year
- ☆12Jun 19, 2024Updated last year
- A JupyterBook site for napari workshop materials☆10Jul 11, 2022Updated 3 years ago
- Python Implementation of multiple unsupervised segmentation models and evaluating them through multiple evaluation metrics☆10Jun 12, 2021Updated 4 years ago
- Weakly supervised nuclei segmentation using mixed points and masks annotation☆10Jan 12, 2020Updated 6 years ago
- Repo containing useful deep learning resources for everyone☆12Feb 11, 2022Updated 4 years ago
- System prompts for using AI tools to generate and improve system prompts☆20Apr 11, 2025Updated 10 months ago
- Visualise brainreg registration output☆10Nov 20, 2021Updated 4 years ago
- Vue幸运转盘组件☆10Jan 3, 2023Updated 3 years ago
- A special flavor of markdown for generating docs or GitHub Pages☆12Aug 23, 2024Updated last year
- Convert .ims to .tif☆14Jul 15, 2021Updated 4 years ago
- A visualization app for 3D-registered data processed in ABBA and QuPath☆20Oct 21, 2022Updated 3 years ago
- Computed tomography (CT) is one of the most widely used radiography exams worldwide for different diagnostic applications. However, CT sc…☆14Apr 26, 2022Updated 3 years ago
- Official repository for reproducing COVID and Lung segmentation prediction (old version of MEDPSeg)☆12Dec 4, 2023Updated 2 years ago
- python package for operant conditioning☆14Sep 17, 2024Updated last year
- ☆12Jan 10, 2021Updated 5 years ago
- DeepHealth Annotate is a web-based tool for viewing and annotating DICOM images. Annotation metadata can be exported in JSON format to be…☆17Feb 24, 2026Updated last week
- Semi-manual alignment to reference templates (SMART): An open source pipeline in R for whole brain mapping☆14Oct 27, 2021Updated 4 years ago
- 3D Signed Distance Function Based Generative Adversarial Networks☆14Oct 4, 2017Updated 8 years ago
- ☆14Feb 21, 2026Updated last week
- Rust extension module for FIJI-like colormapping and channel blending☆19Feb 9, 2026Updated 3 weeks ago
- Materials for the "Version control for research" breakout session of the Best Practice for Code Archiving workshop, 11 December 2016.☆14Dec 10, 2016Updated 9 years ago
- A command-line tool for invoking the DicomAnonmymizer on a file.☆14Oct 31, 2025Updated 4 months ago
- Codes for 'Learning Probabilistic Topological Representations Using Discrete Morse Theory'☆14Sep 19, 2023Updated 2 years ago
- Enhanced Denoising Auto-Encoding Priors for Reconstruction☆11Feb 12, 2026Updated 2 weeks ago
- Elastic Functional Data Analysis MATLAB code☆14Feb 19, 2026Updated last week
- ☆10Oct 14, 2016Updated 9 years ago
- The InnerEye-Gateway is a Windows service that acts as a DICOM end point to run inference on https://github.com/microsoft/InnerEye-DeepLe…☆19Mar 21, 2024Updated last year
- 繁 Think 黑,基於 IBM Plex Sans TC 的自動簡轉繁字體。☆13Mar 8, 2024Updated last year
- Leonardo Citraro, Mateusz Kozinski, Pascal Fua, Towards Reliable Evaluation of Road Network Reconstructions, ECCV 2020☆11Aug 21, 2020Updated 5 years ago