☆25Mar 15, 2024Updated 2 years ago
Alternatives and similar repositories for MUSE
Users that are interested in MUSE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- pLM-informed E(3) equivariant deep graph neural networks for protein-nucleic acid binding site prediction☆26Apr 24, 2024Updated 2 years ago
- ☆17Nov 19, 2023Updated 2 years ago
- MBP: Multi-task Bioassay Pre-training for Protein-Ligand Binding Affinity Prediction☆21Oct 15, 2024Updated last year
- Protein-protein interacting site predictor using deep graph convolutional network☆11Jan 3, 2023Updated 3 years ago
- ☆123Jul 18, 2025Updated 11 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- EdgeSHAPer: Bond-Centric Shapley Value-Based Explanation Method for Graph Neural Networks☆29Mar 30, 2026Updated 2 months ago
- The standalone version / cli-tool of SPOT-Contact-Single available for public use for research purposes.☆16Feb 1, 2024Updated 2 years ago
- ☆79Apr 7, 2026Updated 2 months ago
- Physics-Guided All-Atom Diffusion Model for Accurate Protein-Ligand Complex Prediction☆90Oct 6, 2025Updated 8 months ago
- ☆19Feb 25, 2026Updated 3 months ago
- This repository contains the code for the work on protein-ligand interaction with GNNs and XAI☆36Jan 3, 2024Updated 2 years ago
- ☆16Feb 27, 2024Updated 2 years ago
- ☆57Aug 3, 2024Updated last year
- ☆43Jul 7, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆19Jan 18, 2026Updated 5 months ago
- Adapting protein language models and contrastive learning for highly-accurate drug-target interaction prediction.☆150May 21, 2025Updated last year
- A deep learning framework for deubiquitnase-substrate interaction identification☆13Jul 31, 2025Updated 10 months ago
- ☆18Jun 27, 2025Updated 11 months ago
- Generator and regressor neural networks for antimicrobial peptides☆25Jan 30, 2024Updated 2 years ago
- Geometry-aware protein binding site predictor☆28Aug 29, 2024Updated last year
- codes for KPGT (Knowledge-guided Pre-training of Graph Transformer)☆123Sep 17, 2024Updated last year
- NeuralMD for Protein-ligand Binding Simulation, Nature Communicaitons 2025 https://www.nature.com/articles/s41467-025-67808-z☆49Nov 4, 2025Updated 7 months ago
- ☆22Mar 30, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Communicative Message Passing for Inductive Relation Reasoning(AAAI-2021)☆36Oct 27, 2022Updated 3 years ago
- A Python 3 version of the protein descriptor package propy☆48Feb 8, 2023Updated 3 years ago
- ☆28Oct 15, 2024Updated last year
- Official repository of "Multi-level Interaction Modeling for Protein Mutational Effect Prediction"☆11Jun 30, 2024Updated last year
- ☆12May 16, 2020Updated 6 years ago
- Supporting code for doi 10.1021/acs.jcim.0c01344☆23Sep 10, 2022Updated 3 years ago
- ☆35Dec 15, 2023Updated 2 years ago
- ☆15May 29, 2024Updated 2 years ago
- Code of “Multi-Modal Deep Learning Enables Ultrafast and Accurate Annotation of Enzymatic Active Sites”☆54Nov 4, 2025Updated 7 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Interpretable bilinear attention network with domain adaptation improves drug-target prediction.☆148Feb 19, 2023Updated 3 years ago
- Official implementation for ActFound (Nature Machine Intelligence): A bioactivity foundation model using pairwise meta-learning☆45Oct 28, 2024Updated last year
- A novel graph neural network strategy with the Vina distance optimization terms to predict protein-ligand binding affinity☆32May 16, 2024Updated 2 years ago
- ☆19Sep 5, 2024Updated last year
- ☆141Aug 8, 2024Updated last year
- Epitope Prediction Pipeline and analysis tools built around AlphaFold 2☆20May 9, 2024Updated 2 years ago
- Identifying Protein-DNA binding sites based on multi-view graph embedding fusion☆12Sep 20, 2024Updated last year