☆25Mar 15, 2024Updated 2 years ago
Alternatives and similar repositories for MUSE
Users that are interested in MUSE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- pLM-informed E(3) equivariant deep graph neural networks for protein-nucleic acid binding site prediction☆23Apr 24, 2024Updated last year
- ☆16Nov 19, 2023Updated 2 years ago
- MBP: Multi-task Bioassay Pre-training for Protein-Ligand Binding Affinity Prediction☆21Oct 15, 2024Updated last year
- Protein-protein interacting site predictor using deep graph convolutional network☆12Jan 3, 2023Updated 3 years ago
- ☆116Jul 18, 2025Updated 8 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- EdgeSHAPer: Bond-Centric Shapley Value-Based Explanation Method for Graph Neural Networks☆27Aug 6, 2025Updated 7 months ago
- The standalone version / cli-tool of SPOT-Contact-Single available for public use for research purposes.☆16Feb 1, 2024Updated 2 years ago
- ☆78Dec 20, 2023Updated 2 years ago
- Physics-Guided All-Atom Diffusion Model for Accurate Protein-Ligand Complex Prediction☆89Oct 6, 2025Updated 5 months ago
- This repository contains the code for the work on protein-ligand interaction with GNNs and XAI☆36Jan 3, 2024Updated 2 years ago
- ☆18Feb 25, 2026Updated last month
- ☆13Feb 27, 2024Updated 2 years ago
- ☆55Aug 3, 2024Updated last year
- ☆41Jul 7, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆19Jan 18, 2026Updated 2 months ago
- Adapting protein language models and contrastive learning for highly-accurate drug-target interaction prediction.☆148May 21, 2025Updated 10 months ago
- A deep learning framework for deubiquitnase-substrate interaction identification☆12Jul 31, 2025Updated 7 months ago
- Generator and regressor neural networks for antimicrobial peptides☆25Jan 30, 2024Updated 2 years ago
- ☆17Jun 27, 2025Updated 9 months ago
- NeuralMD for Protein-ligand Binding Simulation, Nature Communicaitons 2025 https://www.nature.com/articles/s41467-025-67808-z☆43Nov 4, 2025Updated 4 months ago
- Geometry-aware protein binding site predictor☆25Aug 29, 2024Updated last year
- codes for KPGT (Knowledge-guided Pre-training of Graph Transformer)☆121Sep 17, 2024Updated last year
- ☆22Mar 30, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆28Oct 15, 2024Updated last year
- Communicative Message Passing for Inductive Relation Reasoning(AAAI-2021)☆35Oct 27, 2022Updated 3 years ago
- A Python 3 version of the protein descriptor package propy☆49Feb 8, 2023Updated 3 years ago
- Code for paper "Rethinking Text-based Protein Understanding: Retrieval or LLM?"☆18Oct 7, 2025Updated 5 months ago
- Official repository of "Multi-level Interaction Modeling for Protein Mutational Effect Prediction"☆11Jun 30, 2024Updated last year
- ☆11May 16, 2020Updated 5 years ago
- Supporting code for doi 10.1021/acs.jcim.0c01344☆23Sep 10, 2022Updated 3 years ago
- ☆35Dec 15, 2023Updated 2 years ago
- ☆15May 29, 2024Updated last year
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- Code of “Multi-Modal Deep Learning Enables Ultrafast and Accurate Annotation of Enzymatic Active Sites”☆49Nov 4, 2025Updated 4 months ago
- Interpretable bilinear attention network with domain adaptation improves drug-target prediction.☆142Feb 19, 2023Updated 3 years ago
- Official implementation for ActFound (Nature Machine Intelligence): A bioactivity foundation model using pairwise meta-learning☆45Oct 28, 2024Updated last year
- A novel graph neural network strategy with the Vina distance optimization terms to predict protein-ligand binding affinity☆32May 16, 2024Updated last year
- ☆19Sep 5, 2024Updated last year
- ☆135Aug 8, 2024Updated last year
- Epitope Prediction Pipeline and analysis tools built around AlphaFold 2☆20May 9, 2024Updated last year