R package for Hidden Markov Models with t emissions
☆10Nov 30, 2018Updated 7 years ago
Alternatives and similar repositories for HMMt
Users that are interested in HMMt are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An automated pipeline for processing DamID sequencing datasets☆16Aug 28, 2025Updated last year
- deepStats: a stastitical toolbox for deeptools and genomic signals☆38Jul 5, 2021Updated 5 years ago
- This project contains simple methods to measure sample relatedness and identify potential swaps and contamination☆10Jan 8, 2016Updated 10 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆30Sep 9, 2021Updated 5 years ago
- LAAVA: Long-read AAV Analysis☆13Oct 27, 2026Updated last week
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- options profits and trading strategies calculator built on the TDAmeritrade API☆11Jun 23, 2020Updated 6 years ago
- ☆14Sep 1, 2026Updated 2 months ago
- DNA-D2S: a systematic error simulation Model for DNA Data Storage channel☆12Feb 14, 2022Updated 4 years ago
- Repository of "Personalization of Logical Models With Multi-Omics Data Allows Clinical Stratification of Patients" paper☆11Dec 2, 2025Updated 11 months ago
- ☆13Oct 29, 2025Updated last year
- This repository constitutes SURFY2 and corresponds to the bioRxiv preprint 'Updating the in silico human surfaceome with meta-ensemble le…☆11Feb 12, 2019Updated 7 years ago
- Julia module to perform haplotype allele-specific DNA methylation analysis.☆10Apr 14, 2026Updated 6 months ago
- Gene Environment Interaction Estimator☆14Sep 17, 2026Updated last month
- Python package providing a customizable, digital representation of the widely-used DNA data storage workflow.☆12Jul 10, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆12May 26, 2020Updated 6 years ago
- Python implementation for regime-dependent portfolio optimization☆17Oct 14, 2023Updated 3 years ago
- Interspecies Point Projection - A tool for comparative genomics beyond alignable sequence☆32Sep 22, 2026Updated last month
- Use hidden Markov models to label regimes on S&P 500 data, train three classifiers (naive Bayes, logistic regression, and support vector …☆16Feb 28, 2023Updated 3 years ago
- Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance☆10Jan 21, 2025Updated last year
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Sep 25, 2019Updated 7 years ago
- Scripts for the analysis of TT-seq and DRB/TT-seq data.☆11Mar 11, 2020Updated 6 years ago
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Oct 15, 2018Updated 8 years ago
- Repository for reproducing figures and tables for the study titled, "Mapping spatial organization and genetic cell state regulators to ta…☆10Sep 5, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Motif Enrichment In Ranked Lists Of Peaks☆10Jun 17, 2021Updated 5 years ago
- call copy number from WES(WXS)☆12May 10, 2021Updated 5 years ago
- Directly create a bigwig file with signal derived from a sorted and indexed bam file.☆11Jul 7, 2017Updated 9 years ago
- A method for calculating single cell entropy and reconstructing cell differentiation lineage using single-cell RNA-seq data☆10May 26, 2023Updated 3 years ago
- Enhanced Chromatin Occupancy (EChO)☆13Jan 8, 2020Updated 6 years ago
- Galaxy Docker Image for the HiCExplorer☆11Mar 3, 2019Updated 7 years ago
- ☆11May 21, 2024Updated 2 years ago
- A Python library for manipulation of CIGAR, MSA, and other alignment formats.☆12Apr 14, 2026Updated 6 months ago
- An R package of functions for single cell -omics analysis.☆11Jul 18, 2023Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆11Aug 30, 2021Updated 5 years ago
- Workflow: Convert CONTROL-freec output to GISTIC2☆10Apr 20, 2021Updated 5 years ago
- Putative G Quadruplex prediction from Fasta file☆10May 15, 2017Updated 9 years ago
- R package to easily generate "V-plots" of paired-end sequencing data over regions of interest☆11Oct 22, 2026Updated 2 weeks ago
- ☆19Apr 9, 2026Updated 6 months ago
- Software for detecting transposable element insertions from next-generation sequencing data☆11Feb 24, 2023Updated 3 years ago
- Code used for DRIPc analysis☆10Jan 16, 2019Updated 7 years ago