helxplatform / dug

Related projects: ⓘ

• monarch-initiative / dragon-ai-results
  ☆11Updated last month
• cmungall / semantic-llama
  A knowledge extraction tool that uses a large language model to extract semantic information from text
  ☆25Updated last year
• biolink / biolink-model-toolkit
  A collection of useful python functions for looking up information and working with the Biolink Model
  ☆20Updated last month
• OBOFoundry / COB
  An experimental ontology containing key terms from Open Biological and Biomedical Ontologies (OBO)
  ☆35Updated this week
• johnbachman / famplex
  Namespace encoding hierarchical relationships between proteins, protein families, and protein complexes.
  ☆12Updated 3 years ago
• NFDI4Chem / knowledge_base
  A place for all knowledge regarding Research Data Management (RDM) in Chemistry
  ☆11Updated last week
• monarch-initiative / curate-gpt
  LLM-driven curation assist tool (pre-alpha)
  ☆57Updated last week
• ncats / stitcher
  A stitching platform for InXight
  ☆16Updated last month
• opentargets-archive / data_pipeline
  Code for the data processing pipeline
  ☆17Updated 3 years ago
• linkml / prefixmaps
  Semantic prefix map registry
  ☆11Updated 2 months ago
• biolink / kgx
  KGX is a Python library for exchanging Knowledge Graphs
  ☆114Updated last month
• INCATools / ubergraph
  Integrated OBO ontology store
  ☆42Updated last month
• EBISPOT / OXO
  Ontology cross-reference and mapping service
  ☆17Updated 2 months ago
• gyorilab / gilda
  Grounding of biomedical named entities with contextual disambiguation
  ☆38Updated 3 weeks ago
• linkml / schema-automator
  Automated assistance for the schema development lifecycle
  ☆37Updated last month
• NCATSTranslator / ReasonerAPI
  NCATS Biomedical Translator Reasoners Standard API
  ☆34Updated last month
• linkml / linkml-map
  Mapping between LinkML schemas
  ☆16Updated 3 weeks ago
• michaelkyu / ddot
  Toolkit for constructing, analyzing, and visualizing data-driven ontologies
  ☆19Updated 5 years ago
• opentargets / OnToma
  Map your disease and phenotype terms to the Open Targets platform ontology
  ☆20Updated last month
• biopragmatics / pyobo
  📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures
  ☆59Updated last month
• fastobo / fastobo-py
  Faultless AST for Open Biomedical Ontologies in Python.
  ☆24Updated 6 months ago
• berkeleybop / artificial-intelligence-ontology
  An ontology modeling classes and relationships describing deep learning networks, their component layers and activation functions, machin…
  ☆15Updated last month
• dbcls / rdf-config
  Describe RDF model and automatically generate SPARQL queries, schema chart, TogoStanza etc.
  ☆12Updated 2 weeks ago
• sorgerlab / famplex
  Resources for grounding protein families and complexes from text and describing their hierarchical relationships.
  ☆18Updated 2 months ago
• ncbi-nlp / BioC-JSON
  Tool that converts between BioC XML files and BioC JSON files
  ☆16Updated 7 years ago
• obophenotype / provisional_cell_ontology
  Draft cell type definitions from data - candidates for inclusion in CL
  ☆11Updated 2 months ago
• allysonlister / swo
  The Software Ontology (SWO) is a resource for describing software tools, their types, tasks, versions, licences, provenance and associate…
  ☆38Updated last year
• monarch-initiative / koza
  Data transformation framework for LinkML data models
  ☆47Updated last month
• biopragmatics / biomappings
  🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…
  ☆50Updated last month
• monarch-initiative / biolink-api
  API for linked biological knowledge
  ☆63Updated 2 years ago