OpenBioML / project-proposal-template
The project proposal template for OpenBioML community projects.
☆18Updated last year
Related projects ⓘ
Alternatives and complementary repositories for project-proposal-template
- Code for CELL-E: Biological Zero-Shot Text-to-Image Synthesis for Protein Localization Prediction☆28Updated last year
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆55Updated last year
- ☆28Updated last year
- Replication attempt for the Protein Folding Model described in https://www.biorxiv.org/content/10.1101/2021.08.02.454840v1☆37Updated 2 years ago
- RITA is a family of autoregressive protein models, developed by LightOn in collaboration with the OATML group at Oxford and the Debora Ma…☆94Updated last year
- My own attempt at a long context genomics model, leveraging recent advances in long context attention modeling (Flash Attention + other h…☆52Updated last year
- ☆62Updated this week
- Interpretable genotype-phenotype landscape modeling☆35Updated 11 months ago
- A repository with exploration into using transformers to predict DNA ↔ transcription factor binding☆81Updated 2 years ago
- ML-guided enzyme engineering☆34Updated last week
- The full training script for Enformer - Tensorflow Sonnet☆16Updated 2 years ago
- This repository contains code for reproducing results in our paper Interpreting Potts and Transformer Protein Models Through the Lens of …☆56Updated 2 years ago
- Learning to untangle genome assembly with graph neural networks.☆71Updated last week
- ☆34Updated 4 years ago
- ☆25Updated 2 years ago
- Repository for the paper "Optimal design of stochastic DNA synthesis protocols based on generative sequence models" (Weinstein et al., AI…☆28Updated 2 years ago
- Implementation of LSTM for detecting regions of Neanderthal introgression in modern human genomes☆9Updated 4 years ago
- Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors☆33Updated 6 months ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆60Updated 2 years ago
- Epistatic Net is an algorithm which allows for spectral regularization of deep neural networks to predict biological fitness functions (e…☆17Updated 3 years ago
- ☆19Updated last year
- Parsing MHC nomenclature in the wild☆16Updated last month
- ☆30Updated 4 years ago
- An SKLearn-style toolbox for estimating and analyzing models, distributions, and functions with context-specific parameters.☆67Updated 3 weeks ago
- To be a next-generation DL-based phenotype prediction from genome mutations.☆19Updated 3 years ago
- Categorical Variational Autoencoders☆23Updated 2 years ago
- A Modular Architecture for Deep Learning Systems☆38Updated last month
- SLIP is a sandbox environment for engineering protein sequences with synthetic fitness functions.☆19Updated 10 months ago
- Implementation of the Triangle Multiplicative module, used in Alphafold2 as an efficient way to mix rows or columns of a 2d feature map, …☆29Updated 3 years ago
- End-to-end deep learning toolkit for predicting protein binding sites and motifs.☆44Updated 5 years ago