OpenBioML / project-proposal-template
The project proposal template for OpenBioML community projects.
☆18Updated 2 years ago
Alternatives and similar repositories for project-proposal-template:
Users that are interested in project-proposal-template are comparing it to the libraries listed below
- Code for CELL-E: Biological Zero-Shot Text-to-Image Synthesis for Protein Localization Prediction☆28Updated last year
- RITA is a family of autoregressive protein models, developed by LightOn in collaboration with the OATML group at Oxford and the Debora Ma…☆96Updated 2 years ago
- ☆29Updated last year
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆70Updated last month
- A repository with exploration into using transformers to predict DNA ↔ transcription factor binding☆84Updated 2 years ago
- The full training script for Enformer - Tensorflow Sonnet☆17Updated 2 years ago
- My own attempt at a long context genomics model, leveraging recent advances in long context attention modeling (Flash Attention + other h…☆52Updated last year
- Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your co…☆69Updated last year
- Effect of tokenization on transformers for biological sequence☆16Updated 10 months ago
- Equivariant layers for RC-complement symmetry in DNA sequence data☆11Updated 2 years ago
- Replication attempt for the Protein Folding Model described in https://www.biorxiv.org/content/10.1101/2021.08.02.454840v1☆37Updated 2 years ago
- Tokenizers and Machine Learning Models for biological sequence data☆25Updated 4 months ago
- ☆34Updated 4 years ago
- ML-guided enzyme engineering☆41Updated 3 months ago
- Implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTorch (NeurIPS 2021)☆72Updated last year
- This repository contains code for reproducing results in our paper Interpreting Potts and Transformer Protein Models Through the Lens of …☆58Updated 2 years ago
- Epistatic Net is an algorithm which allows for spectral regularization of deep neural networks to predict biological fitness functions (e…☆17Updated 3 years ago
- Parsing MHC nomenclature in the wild☆16Updated 4 months ago
- ☆19Updated last year
- ☆130Updated 2 years ago
- DeepRC: Immune repertoire classification with attention-based deep massive multiple instance learning☆117Updated last year
- Interpretable splicing model☆20Updated last year
- Interpretable genotype-phenotype landscape modeling☆35Updated last year
- ☆12Updated 3 months ago
- Whole-cell modeling tutorials☆16Updated 4 years ago
- ☆25Updated 2 years ago
- pytorch implementation of trDesign☆45Updated 3 years ago
- Implementation and replication of ProGen, Language Modeling for Protein Generation, in Jax☆110Updated 3 years ago
- Differentiable Euler Characteristic Transform☆17Updated 8 months ago
- Implementation of the Pairformer model used in AlphaFold 3☆12Updated this week