Alternatives and similar repositories for CROssBARv2

Users that are interested in CROssBARv2 are comparing it to the libraries listed below

• biocypher / project-template
  Template for creating a BioCypher-driven knowledge graph
  ☆12Updated this week
• biocypher / biochatter-next
  The advanced implementation for BioChatter, using Next.js
  ☆13Updated 4 months ago
• johnbachman / famplex
  Namespace encoding hierarchical relationships between proteins, protein families, and protein complexes.
  ☆12Updated 4 years ago
• OpenBioLink / SimulateGPT
  Large language models as universal biomedical simulators
  ☆19Updated 10 months ago
• biocypher / clinical-knowledge-graph
  ☆18Updated 11 months ago
• mims-harvard / Madrigal
  Madrigal: Multimodal AI predicts clinical outcomes of drug combinations from preclinical data
  ☆24Updated 2 months ago
• biocypher / biochatter-light
  The light frontend for BioChatter, in pure Python
  ☆55Updated 3 weeks ago
• bio2bel / drugbank
  A Bio2BEL package for DrugBank (https://www.drugbank.ca)
  ☆9Updated 4 years ago
• ayushnoori / metapaths
  Similarity search in heterogeneous knowledge graphs using meta paths.
  ☆26Updated 2 years ago
• ckoenigs / PharMeBINet
  Build PharMeBINet from different sources.
  ☆16Updated 2 months ago
• biopragmatics / bioversions
  🪝 What's the latest version for each database?
  ☆27Updated this week
• krassowski / multi-omics-state-of-the-field
  Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"
  ☆27Updated last year
• BioDWH2 / BioDWH2
  BioDWH2 is an easy-to-use, automated, graph-based data warehouse and mapping tool for bioinformatics and medical informatics.
  ☆16Updated last week
• bio2bel / bio2bel
  A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)
  ☆21Updated 3 years ago
• kyunghyuncho / pubmed-vectors
  ☆31Updated 11 months ago
• netlab-ku / pyPARAGON
  PAgeRAnk-flux on Graphlet-guided network for multi-Omic data integratioN - Network Inference
  ☆11Updated 6 months ago
• chembl / tractability_pipeline_v2
  Pipeline for assessing the tractability of potential targets (starting from Gene IDs)
  ☆24Updated 3 months ago
• AstraZeneca / StarGazer
  StarGazer is a tool designed for rapidly assessing drug repositioning opportunities. It combines multi-source, multi-omics data with a no…
  ☆35Updated last year
• biothings / mychem.info
  MyChem.info: A BioThings API for chemical/drug annotations
  ☆16Updated last month
• AstraZeneca / skywalkR-graph-features
  Example notebooks that illustrate how to generate knowledge-based features. Features can be used in a variety of ML models, including rec…
  ☆11Updated 3 years ago
• PathwayCommons / factoid
  A project to capture biological pathway data from academic papers
  ☆29Updated 2 months ago
• pachterlab / gget_examples
  Examples for gget (https://github.com/pachterlab/gget).
  ☆34Updated 3 weeks ago
• ncbi-nlp / pubtator-gpt
  ☆25Updated last year
• JonnyTran / OpenOmics
  A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.
  ☆32Updated 10 months ago
• sib-swiss / sparql-training
  This repository contains training material for querying SIB (Swiss Institute of Bioinformatics) resources with SPARQL.
  ☆11Updated 7 months ago
• eMetaboHUB / Forum-DiseasesChem
  A Knowledge Graph from public databases and scientific literature to extract associations between chemicals and diseases.
  ☆16Updated 10 months ago
• Future-House / BixBench
  Benchmark for LLM-based Agents in Computational Biology
  ☆40Updated last month
• aberHRML / metabolighteR
  R Interface to the Metabolights REST API
  ☆11Updated last month
• zhao-ht / BioMaze
  ☆16Updated 3 months ago
• MaayanLab / Playbook-Workflow-Builder
  A repository for the Playbook Workflow Builder project.
  ☆19Updated this week