Alternatives and similar repositories for nextflow-workshop

Users that are interested in nextflow-workshop are comparing it to the libraries listed below

• nf-core / scdownstream
  A single cell transcriptomics pipeline for QC, integration and making the data presentable
  ☆83Updated this week
• nf-core / differentialabundance
  Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
  ☆88Updated last week
• nf-core / airrflow
  B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework
  ☆73Updated this week
• gexijin / idepGolem
  ☆43Updated last month
• nf-core / rnasplice
  rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis
  ☆63Updated 7 months ago
• ulelab / clipplotr
  A tool to facilitate comparative visualisation of CLIP data
  ☆16Updated 2 years ago
• tavareshugo / tutorial_DESeq2_contrasts
  ☆65Updated last year
• vanallenlab / comut
  CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots
  ☆96Updated last year
• sheynkman-lab / Long-Read-Proteogenomics
  A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
  ☆50Updated 3 years ago
• pachterlab / seqspec
  machine-readable file format for genomic library sequence and structure
  ☆126Updated 4 months ago
• crazyhottommy / compbio_resources_chatomics
  ☆27Updated 2 years ago
• kvittingseerup / IsoformSwitchAnalyzeR
  An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)
  ☆122Updated last month
• dozmorovlab / excluderanges
  Genomic coordinates of problematic genomic regions as GRanges
  ☆51Updated last month
• snakemake-workflows / rna-seq-kallisto-sleuth
  A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
  ☆68Updated this week
• gatk-workflows / gatk4-rnaseq-germline-snps-indels
  Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools
  ☆84Updated 4 years ago
• mdozmorov / ChIP-seq_notes
  Notes on ChIP-seq and other-seq-related tools
  ☆26Updated 2 weeks ago
• tobiasrausch / ATACseq
  Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)
  ☆75Updated 2 years ago
• crazyhottommy / compbio_tutorials
  My youtube programming scripts
  ☆59Updated last year
• parklab / ShatterSeek
  ☆74Updated 2 years ago
• BUStools / bustools
  Tools for working with BUS files
  ☆102Updated 8 months ago
• SigProfilerSuite / SigProfilerAssignment
  Assignment of known mutational signatures to individual samples and individual somatic mutations
  ☆73Updated last week
• ricomnl / bioinformatics-pipeline-tutorial
  A tutorial on how to create bioinformatics pipelines as bash scripts, Makefiles and using tools like Nextflow.
  ☆16Updated 3 years ago
• crazyhottommy / ML-YouTube-Courses
  📺 Discover the latest machine learning / AI courses on YouTube.
  ☆24Updated 2 years ago
• nf-core / circrna
  circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data
  ☆58Updated 2 months ago
• ygidtu / trackplot
  trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…
  ☆99Updated last month
• daisybio / NEASE
  A network-based approach for exon set enrichment
  ☆15Updated 6 months ago
• signalbash / how_are_we_stranded_here
  Check strandedness of RNA-Seq fastq files
  ☆128Updated 3 years ago
• icbi-lab / nextNEOpi
  nextNEOpi: a comprehensive pipeline for computational neoantigen prediction
  ☆83Updated 7 months ago
• LuyiTian / FLAMES
  Full-length transcriptome splicing and mutation analysis
  ☆86Updated last year
• epi2me-labs / wf-single-cell
  ☆104Updated last week