Alternatives and similar repositories for FileLoop

Users that are interested in FileLoop are comparing it to the libraries listed below

• aadityabuilds / recombyne
  cursor for plasmid sequences design
  ☆34Updated 3 months ago
• nageshsinghc4 / DNA-Sequence-Machine-learning
  Understand DNA structure and how machine learning can be used to work with DNA sequence data.
  ☆38Updated 4 years ago
• kundajelab / coessentiality
  Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)
  ☆27Updated 3 years ago
• cbg-ethz / dce
  Finding the causality in biological pathways
  ☆13Updated 2 years ago
• rsinghlab / pyaging
  A Python-based compendium of GPU-optimized aging clocks.
  ☆114Updated this week
• jmschrei / memesuite-lite
  A lightweight reimplementation of some of the algorithms in the MEME suite in Python.
  ☆27Updated 3 months ago
• zhanglab-aim / EMGNN
  Explainable Multilayer Graph Neural Network for Cancer Gene Prediction
  ☆19Updated 2 years ago
• mcvickerlab / GenVarLoader
  Dataloader for applying sequence models to personalized genomics
  ☆27Updated last week
• lovelyscientist / rna-seq-vae
  Variational Auto-Encoder that generates synthetic gene expression data
  ☆24Updated 2 years ago
• de-Boer-Lab / hashFrag
  A command-line tool to mitigate homology-based data leakage in sequence-to-expression models
  ☆18Updated last month
• EmanuelGoncalves / crispy
  Python module to analyse CRISPR-based libraries
  ☆13Updated 4 years ago
• ekernf01 / perturbation_benchmarking
  Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.
  ☆21Updated 2 months ago
• scverse / formulaic-contrasts
  Build contrasts for models defined with formulaic
  ☆13Updated this week
• IlyaLab / CombiningDependentPvaluesUsingEBM
  Python, R and Matlab implementation of Brown's Method to combine dependent P-values
  ☆25Updated 7 years ago
• ML4GLand / SeqData
  Annotated sequence data
  ☆11Updated 9 months ago
• saezlab / progeny-py
  PROGENY Python implementation
  ☆12Updated 3 years ago
• IEDB / PEPMatch
  ☆22Updated last week
• ML4GLand / EUGENe
  Elucidating the Utility of Genomic Elements with Neural Nets
  ☆70Updated 11 months ago
• valence-labs / TxPert
  A repository for reproducing experiments from the TxPert paper
  ☆21Updated 6 months ago
• kundajelab / gkmexplain
  Accompanying repository for GkmExplain paper
  ☆23Updated 5 years ago
• theislab / vevo_Tahoe_100m_analysis
  ☆32Updated 6 months ago
• pyranges / bamread
  Bam to Pandas DataFrame, quickly
  ☆13Updated 6 months ago
• mlf-core / mlf-core
  CPU and GPU deterministic and therefore fully reproducible machine learning pipelines using MLflow.
  ☆45Updated 2 years ago
• theislab / geome
  ☆15Updated this week
• goodarzilab / pypage
  python implementation of the PAGE algorithm
  ☆18Updated last year
• Pweidemueller / fullRankMatrix
  It discovers linear dependent columns and then replaces linear dependent columns with linearly independent columns that span the space o…
  ☆14Updated last year
• anitalu724 / MutScape
  Ａ user-friendly Python toolkit, which provides a comprehensive pipeline to easily explore the cohort-based mutational characterization fo…
  ☆21Updated 3 years ago
• pfizer-opensource / bigwig-loader
  A fast dataloader for bigwig files made for machine learning
  ☆28Updated 2 weeks ago
• ylaboratory / gene-embedding-benchmarks
  Benchmarking gene embeddings on single, paired, and gene set tasks
  ☆17Updated this week
• ArcInstitute / scRecounter
  Nextflow pipeline to re-process all public single-cell RNA-seq data
  ☆30Updated 4 months ago