Code to accompany the "Implications of Topological Imbalance for Representation Learning on Biomedical Knowledge Graphs" (Briefings in Bioinformatics, 2022)
☆19Feb 11, 2026Updated 6 months ago
Alternatives and similar repositories for biomedical-kg-topological-imbalance
Users that are interested in biomedical-kg-topological-imbalance are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code to accompany the "Understanding the Performance of Knowledge Graph Embeddings in Drug Discovery" manuscript (Artificial Intelligence…☆34Jan 8, 2026Updated 8 months ago
- Source code and data repository for "Ensembles of knowledge graph embedding models improve predictions for drug discovery"☆20Jan 17, 2024Updated 2 years ago
- learning biology syllabus, geared for machine learning folks☆154Dec 5, 2022Updated 3 years ago
- ☆20Sep 14, 2024Updated last year
- Readings for "A Unified View of Relational Deep Learning for Drug Pair Scoring." (IJCAI 2022)☆101Aug 7, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Python deployment tool for bespoke image curation projects, oriented toward scientific projects. Please cite https://academic.oup.com/gig…☆14Aug 6, 2022Updated 4 years ago
- Code repository for "Prioritizing Repurposable Drugs for SARS-CoV-2 using Deep Learning and Population-based Validation"☆16May 2, 2025Updated last year
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…☆45Sep 7, 2022Updated 4 years ago
- A collection of resources on the topic of Complex Logical Query Answering☆180Sep 30, 2023Updated 2 years ago
- Multi-Hop Logical Reasoning in Knowledge Graphs☆20Mar 2, 2021Updated 5 years ago
- ☆34Nov 24, 2020Updated 5 years ago
- Y. Zhang, Q. Yao, J. Kwok. Bilinear Scoring Function Search for Knowledge Graph Learning. TPAMI 2022☆68Dec 1, 2023Updated 2 years ago
- Source code and data for "Causal reasoning over knowledge graphs leveraging drug-perturbed and disease-specific transcriptomic signatures…☆19Jul 3, 2024Updated 2 years ago
- Network-based project to explore gene connectivity through biological scales☆24Oct 21, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Interactive & explainable GNN for drug repurposing☆14Mar 14, 2024Updated 2 years ago
- (Personalized) Page-Rank computation using PyTorch☆93Nov 30, 2022Updated 3 years ago
- A collection of research papers, datasets and software related to knowledge graphs for drug discovery. Accompanies the paper "A review of…☆269Jul 27, 2026Updated last month
- A comprehensive computational pipeline that bridges single-cell genomics and cheminformatics to accelerate Alzheimer's Disease research. …☆11Jul 13, 2025Updated last year
- Network-based Drug Repurposing for Human Coronavirus☆41Feb 4, 2020Updated 6 years ago
- The official source code for "Deep single-cell RNA-seq data clustering with graph prototypical contrastive learning", accepted at Bioinfo…☆24Jul 14, 2023Updated 3 years ago
- GraphCDR: A graph neural network method with contrastive learning for cancer drug response prediction☆32Sep 27, 2021Updated 4 years ago
- tg fitness tracking bot☆15Updated this week
- Code to build the Target Central Resource Database (TCRD).☆11Jul 20, 2021Updated 5 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- An insertion caller for Illumina paired-end WGS data.☆26Aug 22, 2025Updated last year
- ☆74Jul 6, 2023Updated 3 years ago
- OntoMerger is an ontology alignment library for deduplicating knowledge graph nodes that represent the same domain.☆102Jan 11, 2024Updated 2 years ago
- Explanation method for Graph Neural Networks (GNNs)☆72Apr 27, 2025Updated last year
- OpenBioLink is a resource and evaluation framework for evaluating link prediction models on heterogeneous biomedical graph data.☆163May 3, 2024Updated 2 years ago
- Top Life Sciences open-source software☆23Jun 9, 2024Updated 2 years ago
- Simple yet SoTA Knowledge Graph Embeddings.☆111Jun 6, 2022Updated 4 years ago
- CMU Linguistic Annotation Backend☆15Sep 22, 2025Updated 11 months ago
- ☆60Nov 15, 2020Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Drug Repurposing using TigerGraph and Graph Machine Learning.☆18Feb 13, 2022Updated 4 years ago
- 📖 A review of KGEM packages and frameworks at https://pykeen.github.io/kgem-software-review.☆12Jun 24, 2024Updated 2 years ago
- The OpenTrials data collectors + warehouse schema definition.☆18May 2, 2017Updated 9 years ago
- 📊 Results from the reproducibility and benchmarking studies presented in "Bringing Light Into the Dark: A Large-scale Evaluation of Know…☆36Apr 19, 2022Updated 4 years ago
- Method for drug repurposing from knowledge graphs and literature☆37Aug 28, 2020Updated 6 years ago
- Code that illustrates some of owlready2 functionality to parse an owl file☆11Feb 7, 2023Updated 3 years ago
- A de novo prediction tool of chromatin accessible regions for plant genomes☆10Aug 12, 2021Updated 5 years ago