Code to accompany the "Implications of Topological Imbalance for Representation Learning on Biomedical Knowledge Graphs" (Briefings in Bioinformatics, 2022)
☆19Feb 11, 2026Updated 2 months ago
Alternatives and similar repositories for biomedical-kg-topological-imbalance
Users that are interested in biomedical-kg-topological-imbalance are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code to accompany the "Understanding the Performance of Knowledge Graph Embeddings in Drug Discovery" manuscript (Artificial Intelligence…☆34Jan 8, 2026Updated 4 months ago
- Source code and data repository for "Ensembles of knowledge graph embedding models improve predictions for drug discovery"☆20Jan 17, 2024Updated 2 years ago
- learning biology syllabus, geared for machine learning folks☆145Dec 5, 2022Updated 3 years ago
- ☆19Sep 14, 2024Updated last year
- Readings for "A Unified View of Relational Deep Learning for Drug Pair Scoring." (IJCAI 2022)☆99Aug 7, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Python deployment tool for bespoke image curation projects, oriented toward scientific projects. Please cite https://academic.oup.com/gig…☆14Aug 6, 2022Updated 3 years ago
- A collection of resources on the topic of Complex Logical Query Answering☆181Sep 30, 2023Updated 2 years ago
- Multi-Hop Logical Reasoning in Knowledge Graphs☆20Mar 2, 2021Updated 5 years ago
- A nextflow pipeline for analysing expression and splicing in RNA seq data from rare disease patient☆18Apr 1, 2026Updated last month
- ☆34Nov 24, 2020Updated 5 years ago
- Y. Zhang, Q. Yao, J. Kwok. Bilinear Scoring Function Search for Knowledge Graph Learning. TPAMI 2022☆69Dec 1, 2023Updated 2 years ago
- PyG re-implementation of Neural Bellman-Ford Networks (NeurIPS 2021)☆76Aug 25, 2022Updated 3 years ago
- Network-based project to explore gene connectivity through biological scales☆23Oct 21, 2024Updated last year
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…☆45Sep 7, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- (Personalized) Page-Rank computation using PyTorch☆93Nov 30, 2022Updated 3 years ago
- Code to build the Target Central Resource Database (TCRD).☆11Jul 20, 2021Updated 4 years ago
- ☆13Sep 11, 2024Updated last year
- An insertion caller for Illumina paired-end WGS data.☆24Aug 22, 2025Updated 8 months ago
- A general purpose recommender metrics library for fair evaluation.☆277Aug 22, 2023Updated 2 years ago
- Pathway visualization and analysis tool for Pathway Commons and other BioPAX data☆14May 25, 2022Updated 3 years ago
- Drug Repurposing using TigerGraph and Graph Machine Learning.☆19Feb 13, 2022Updated 4 years ago
- Explanation method for Graph Neural Networks (GNNs)☆71Apr 27, 2025Updated last year
- OntoMerger is an ontology alignment library for deduplicating knowledge graph nodes that represent the same domain.☆102Jan 11, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- GraphQL to SPARQL bridge☆24Feb 9, 2022Updated 4 years ago
- Simple yet SoTA Knowledge Graph Embeddings.☆111Jun 6, 2022Updated 3 years ago
- CMU Linguistic Annotation Backend☆15Sep 22, 2025Updated 7 months ago
- ☆59Nov 15, 2020Updated 5 years ago
- The OpenTrials data collectors + warehouse schema definition.☆18May 2, 2017Updated 9 years ago
- A collection of research papers, datasets and software related to knowledge graphs for drug discovery. Accompanies the paper "A review of…☆253Updated this week
- Research repository for the proposed equivariant graph attention network that operates on large biomolecules proposed by Le et al. (2022)☆20Dec 1, 2022Updated 3 years ago
- 📖 A review of KGEM packages and frameworks at https://pykeen.github.io/kgem-software-review.☆12Jun 24, 2024Updated last year
- 📊 Results from the reproducibility and benchmarking studies presented in "Bringing Light Into the Dark: A Large-scale Evaluation of Know…☆36Apr 19, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Code that illustrates some of owlready2 functionality to parse an owl file☆11Feb 7, 2023Updated 3 years ago
- A Python package for drug discovery by analyzing causal paths on multiscale networks☆28Jul 1, 2024Updated last year
- ☆11Apr 20, 2020Updated 6 years ago
- ☆16Jun 17, 2024Updated last year
- 👾 classifying complex graph networks with machine learning☆15Oct 15, 2024Updated last year
- Learning neural network embeddings in hyperbolic spaces☆14Dec 4, 2019Updated 6 years ago
- OpenBioLink is a resource and evaluation framework for evaluating link prediction models on heterogeneous biomedical graph data.☆159May 3, 2024Updated 2 years ago