⚠️ Moved to github.com/tsenoner/protspace — this repo is archived (Python package now lives under apps/protspace/ in the monorepo).
☆51Jul 14, 2026Updated 2 months ago
Alternatives and similar repositories for protspace-legacy
Users that are interested in protspace-legacy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python framework for interpretable protein prediction☆88Updated this week
- Biological prediction models made simple.☆54Updated this week
- ☆17Nov 2, 2024Updated last year
- Unleash MMseqs2’s power for your protein and nucleotide sequence analysis. Fast, simple, seamless!☆46Aug 11, 2026Updated last month
- ☆44Aug 29, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A simple but powerful VSCode extension for visualizing protein structures using the Molstar framework.☆38Jul 15, 2026Updated 2 months ago
- Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"☆13Apr 2, 2023Updated 3 years ago
- Evaluating Nanopore-based bacterial variant calling☆23Jul 23, 2025Updated last year
- Protein Language Modeling beyond static folds reveals sequence-encoded flexibility☆37Feb 1, 2026Updated 7 months ago
- 🦠🧬 Unraveling Viral Genomes from Metagenomes☆11Jul 30, 2026Updated last month
- ☆10Jun 9, 2025Updated last year
- Multiple Protein Structure Alignment at Scale with FoldMason☆283May 11, 2026Updated 4 months ago
- Python package for AAIndex databases (https://www.genome.jp/aaindex/)☆15Aug 7, 2026Updated last month
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆38Sep 4, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Molecular Dynamics Sub Sampler☆10Jul 24, 2024Updated 2 years ago
- Differential k-mer analysis☆42Jan 29, 2024Updated 2 years ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆101Mar 12, 2026Updated 6 months ago
- Eukaryote Genome Annotation☆25Aug 21, 2026Updated last month
- ☆22Aug 14, 2026Updated last month
- EnzyDock: Protein–Ligand Docking of Multiple Reactive States along a Reaction Coordinate in Enzymes☆18Sep 5, 2024Updated 2 years ago
- Bilingual Language Model for Protein Sequence and Structure☆321Mar 6, 2026Updated 6 months ago
- A tutorials suite for BioSimSpace.☆37Oct 22, 2025Updated 10 months ago
- A curated list of the best bioinformatics books, all in one place☆13Oct 12, 2015Updated 10 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Environment for developing substructure-aware protein models☆16Mar 26, 2026Updated 5 months ago
- DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.☆31Mar 4, 2025Updated last year
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Jan 19, 2026Updated 8 months ago
- Protein binding site prediction with transformers☆18Jul 7, 2026Updated 2 months ago
- TD2☆42May 17, 2026Updated 4 months ago
- kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more☆49Jul 12, 2026Updated 2 months ago
- Representation learning for protein functional site analysis☆17Aug 11, 2023Updated 3 years ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆39Aug 21, 2026Updated last month
- Transmembrane proteins predicted through Language Model embeddings☆56Feb 24, 2026Updated 6 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Map genetic variants and protein positions to protein interfaces in 3D☆13Sep 22, 2023Updated 2 years ago
- Simple-to-use interactive comparison of two bacterial genomes☆28Jan 30, 2026Updated 7 months ago
- A simple toolkit for manipulating nanopore signal data☆20Mar 14, 2026Updated 6 months ago
- easy_sbatch - Batch submitting Slurm jobs with script templates☆16Dec 28, 2021Updated 4 years ago
- Protein Engineering via Exploration of an Energy Landscape☆147Sep 7, 2026Updated 2 weeks ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆66May 17, 2026Updated 4 months ago
- [Archived] SnakeMake pipeline to run BlobTools on public assemblies☆11Jul 3, 2023Updated 3 years ago