tgirke / systemPipeRdataLinks
NGS workflow templates and sample data
☆9Updated 2 months ago
Alternatives and similar repositories for systemPipeRdata
Users that are interested in systemPipeRdata are comparing it to the libraries listed below
Sorting:
- BioC2020: Where Software and Biology Connect☆12Updated 2 years ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated 2 years ago
- R package for benchmarking single cell analysis methods☆32Updated last year
- Molecular Signatures Database (MSigDB) in a data frame☆16Updated 6 years ago
- The blog of tidyomics☆14Updated 3 weeks ago
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Updated 8 years ago
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆21Updated 4 years ago
- An R package for multi-dimensional pathway enrichment analysis☆16Updated 3 months ago
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆29Updated 3 months ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆10Updated last year
- Repository for supplemental material of manuscripts☆18Updated 4 years ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 4 years ago
- Differential Correlation across Ranked Samples☆12Updated 2 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- Code for EpiMap data browser☆14Updated last year
- R wrapper for utilizing the SigProfilerMatrixGenerator framework☆20Updated 2 years ago
- [DEPRECATED] Docker Images which include a complete installation of all software needed to build all Bioconductor packages☆25Updated 2 years ago
- R interface to megadepth: BigWig and BAM related utilities☆12Updated 7 months ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated 2 weeks ago
- Gene-level general linear mixed model☆22Updated 6 months ago
- Toolbox package for organizing and working with TCGA data☆28Updated 3 weeks ago
- This is the ensembldb development repository.☆35Updated 11 months ago
- Non-official Git repository for R package cellrangerRkit (currently not available elsewhere; I'm not affiliated with 10x)☆19Updated 6 years ago
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆21Updated last month
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆46Updated 8 months ago
- R package providing Variance Stabilizing Transformations appropriate for RNA-Seq data☆21Updated 2 months ago
- An online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.☆37Updated 2 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- Functional enrichment analysis of high-throughput omics data☆20Updated 7 months ago