Alternatives and similar repositories for systemPipeRdata:

Users that are interested in systemPipeRdata are comparing it to the libraries listed below

• leekgroup / networks_correction
  Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"
  ☆16Updated 5 years ago
• Bioconductor / BiocWorkshops2019
  The official repository of the Bioconductor 2019 Conference Workshops
  ☆25Updated last year
• lianos / multiGSEA
  NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …
  ☆21Updated 4 years ago
• stephenturner / msigdf
  Molecular Signatures Database (MSigDB) in a data frame
  ☆17Updated 6 years ago
• waldronlab / enrichOmics
  Functional enrichment analysis of high-throughput omics data
  ☆20Updated 3 weeks ago
• fperraudeau / bioc2017singlecell
  Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…
  ☆11Updated 7 years ago
• myles-lewis / glmmSeq
  Gene-level general linear mixed model
  ☆19Updated last week
• tidyomics / tidyomicsBlog
  the manifesto, workshops and tutorials of the tidy transcriptomics
  ☆12Updated 8 months ago
• karissawhiting / cbioportalR
  R package to wrap cBioPortal's API to pull data from public or private cBioPortal databases
  ☆21Updated 2 months ago
• malhamdoosh / EGSEA
  This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.
  ☆10Updated last year
• Bioconductor / BioC2020
  BioC2020: Where Software and Biology Connect
  ☆12Updated last year
• HCBravoLab / scTreeViz
  R/Bioconductor package to interactively explore single cell clusters at multiple resolutions
  ☆10Updated 2 years ago
• waldronlab / MultiAssayWorkshop
  Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment
  ☆19Updated last year
• JhuangLab / ngstk
  A toolkit developed by JhuangLab members to facilitate the analysis of next-generation sequencing (NGS) data.
  ☆19Updated 6 years ago
• markziemann / mitch
  An R package for multi-dimensional pathway enrichment analysis
  ☆16Updated 2 months ago
• qingjian1991 / MPTevol
  ☆10Updated 2 years ago
• statOmics / zinbwaveZinger
  Integrating zingeR with ZINB-WaVE weights
  ☆23Updated 6 years ago
• lgatto / tidies
  A Grammar of Data Manipulation for Omics Data
  ☆21Updated 4 years ago
• federicomarini / ideal
  Interactive Differential Expression AnaLysis - DE made accessible and reproducible
  ☆29Updated last month
• AlexandrovLab / SigProfilerMatrixGeneratorR
  R wrapper for utilizing the SigProfilerMatrixGenerator framework
  ☆20Updated 2 years ago
• MonashBioinformaticsPlatform / celaref
  ☆14Updated 5 years ago
• stephenslab / gtexresults
  Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…
  ☆23Updated last year
• clindet / anor
  anor: an annotation and visualization system based on R and Shiny framework
  ☆33Updated 4 years ago
• uc-bd2k / GREP2
  GEO RNA-seq Experiments Processing Pipeline
  ☆21Updated 5 years ago
• Bioconductor / BuildABiocWorkshop
  Template for building a bioconductor workshop package using github actions
  ☆19Updated 6 months ago
• stephaniehicks / methylCC
  R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms
  ☆19Updated 2 years ago
• shazanfar / DCARS
  Differential Correlation across Ranked Samples
  ☆12Updated last year
• gjhunt / dtangle
  Cell type deconvolution from high-throughput gene expression profiling experiments.
  ☆31Updated 3 years ago
• brentp / 450k-analysis-guide
  A Practical (And Opinionated) Guide To Analyzing 450K Data
  ☆35Updated 10 years ago
• hb-gitified / cellrangerRkit
  Non-official Git repository for R package cellrangerRkit (currently not available elsewhere; I'm not affiliated with 10x)
  ☆19Updated 5 years ago