takanori-fujiwara / ccpcaLinks
ccPCA: contrasting clusters in PCA.
☆21Updated last month
Alternatives and similar repositories for ccpca
Users that are interested in ccpca are comparing it to the libraries listed below
Sorting:
- A Python Library for Evaluating the Reliability of Dimensionality Reduction Embeddings☆37Updated 3 weeks ago
- Scalable analysis of large high-dimensional data☆66Updated 5 years ago
- Here we address the global structure preservation by tSNE and UMAP☆48Updated 5 years ago
- A Jupyter widget for comparing two embeddings with shared labels by their confusion, neighborhoods, and size.☆44Updated 7 months ago
- Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning wit…☆68Updated 2 years ago
- ☆20Updated 4 years ago
- Progressive Uniform Manifold Approximation and Projection (EuroVis 2020 short)☆13Updated 2 years ago
- Creating multi-resolution embeddings and clusters from high dimensional data☆53Updated 9 months ago
- Code for the paper on t-SNE with variable degree of freedom☆24Updated 4 years ago
- An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data☆7Updated 7 years ago
- ☆16Updated last year
- topological data analysis of population-scale microbiomes☆31Updated 2 years ago
- Python Wrapper for FIt-SNE☆45Updated 4 years ago
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.☆70Updated 11 months ago
- A spectral method for assessing and combining multiple data visualizations☆50Updated last year
- An implementation of Consensus clustering in Python☆62Updated last year
- ☆18Updated 6 months ago
- ☆16Updated 9 months ago
- A project for exploring differentially active signaling paths related to proteomics datasets☆42Updated this week
- t-SNE and dynamic t-SNE in theano☆77Updated 6 years ago
- Here I explain the math behind UMAP and show how to program it from scratch in Python☆38Updated 4 years ago
- Ultra-fast clustering of very large single cell RNA-seq data☆10Updated 4 years ago
- ☆10Updated 4 years ago
- ☆55Updated 5 years ago
- Accompanying repository for GkmExplain paper☆22Updated 4 years ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆45Updated last year
- (PLEASE USE https://github.com/HanKruiger/tsNET) This is here for historical purpose only.☆10Updated 6 years ago
- ☆33Updated 4 years ago
- The Clustergrammer interactive Jupyter notebook widget☆47Updated 2 years ago
- A tool for visualizing ABC enhancer-gene connections in the context of genetic variants.☆12Updated 2 years ago