Alternatives and similar repositories for ccpca

Users that are interested in ccpca are comparing it to the libraries listed below

• Novartis / peax
  Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning wit…
  ☆68Updated 2 years ago
• hyungkwonko / progressive-umap
  Progressive Uniform Manifold Approximation and Projection (EuroVis 2020 short)
  ☆13Updated 2 years ago
• HanKruiger / tsnetwork
  (PLEASE USE https://github.com/HanKruiger/tsNET) This is here for historical purpose only.
  ☆10Updated 6 years ago
• hj-n / zadu
  A Python Library for Evaluating the Reliability of Dimensionality Reduction Embeddings
  ☆39Updated this week
• ismms-himc / clustergrammer2
  "Dimensionality-increasing" data visualization tool and interactive WebGL Jupyter widget built for single-cell data.
  ☆118Updated 2 years ago
• NikolayOskolkov / tSNE_vs_UMAP_GlobalStructure
  Here we address the global structure preservation by tSNE and UMAP
  ☆48Updated 5 years ago
• MaayanLab / clustergrammer
  An interactive heatmap visualization built using D3.js
  ☆235Updated 2 years ago
• berenslab / ne-spectrum
  Attraction-Repulsion Spectrum in Neighbor Embeddings
  ☆31Updated 2 years ago
• OzetteTech / comparative-embedding-visualization
  A Jupyter widget for comparing two embeddings with shared labels by their confusion, neighborhoods, and size.
  ☆45Updated 9 months ago
• JosuaKrause / bubblesets-js
  A JavaScript implementation of Bubble Sets.
  ☆48Updated last year
• flekschas / enhancer-gene-vis
  A tool for visualizing ABC enhancer-gene connections in the context of genetic variants.
  ☆12Updated 2 years ago
• pachterlab / picasso
  Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.
  ☆70Updated last year
• davisidarta / topometry
  Systematically learn and evaluate manifolds from high-dimensional data
  ☆101Updated 2 years ago
• steveharoz / Vis-Acceptance-Rates
  ☆31Updated 4 years ago
• dkobak / finer-tsne
  Code for the paper on t-SNE with variable degree of freedom
  ☆24Updated 5 years ago
• canzarlab / JVis-learn
  ☆20Updated 4 years ago
• shwhalen / ml-pitfalls
  Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"
  ☆45Updated last year
• visdesignlab / upset2
  UpSet - Visualizing Intersecting Sets
  ☆69Updated last week
• VCG / upset
  UpSet - Visualizing Intersecting Sets
  ☆237Updated 3 years ago
• KlugerLab / pyFIt-SNE
  Python Wrapper for FIt-SNE
  ☆45Updated 4 years ago
• labsyspharm / visinity
  ☆17Updated last year
• jxz12 / s_gd2
  Stress-based Graph Drawing by Stochastic Gradient Descent
  ☆48Updated 2 years ago
• ppsp-team / StratiPy
  Graph regularized nonnegative matrix factorization (GNMF) in Python
  ☆45Updated 5 years ago
• kylessmith / dynamicTreeCut
  Python translation of the hybrid dynamicTreeCut method as created by Peter Langfelder and Bin Zhang.
  ☆40Updated 3 years ago
• paulorauber / thesne
  t-SNE and dynamic t-SNE in theano
  ☆77Updated 6 years ago
• Nicola17 / High-Dimensional-Inspector
  Scalable analysis of large high-dimensional data
  ☆66Updated 5 years ago
• KrishnaswamyLab / Multiscale_PHATE
  Creating multi-resolution embeddings and clusters from high dimensional data
  ☆55Updated 11 months ago
• krassowski / gsea-api
  Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)
  ☆15Updated 2 years ago
• IlyaLab / CombiningDependentPvaluesUsingEBM
  Python, R and Matlab implementation of Brown's Method to combine dependent P-values
  ☆25Updated 7 years ago
• abidlabs / contrastive
  Contrastive PCA
  ☆220Updated 10 months ago