takanori-fujiwara / ccpcaLinks
ccPCA: contrasting clusters in PCA.
☆21Updated 5 months ago
Alternatives and similar repositories for ccpca
Users that are interested in ccpca are comparing it to the libraries listed below
Sorting:
- Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning wit…☆68Updated 2 years ago
- (PLEASE USE https://github.com/HanKruiger/tsNET) This is here for historical purpose only.☆10Updated 6 years ago
- A Python Library for Evaluating the Reliability of Dimensionality Reduction Embeddings☆43Updated 2 weeks ago
- "Dimensionality-increasing" data visualization tool and interactive WebGL Jupyter widget built for single-cell data.☆118Updated 2 years ago
- An interactive heatmap visualization built using D3.js☆237Updated 2 years ago
- Here we address the global structure preservation by tSNE and UMAP☆47Updated 5 years ago
- Progressive Uniform Manifold Approximation and Projection (EuroVis 2020 short)☆13Updated 2 years ago
- A Jupyter widget for comparing two embeddings with shared labels by their confusion, neighborhoods, and size.☆47Updated last year
- Code for the paper on t-SNE with variable degree of freedom☆25Updated 5 years ago
- A tool for visualizing ABC enhancer-gene connections in the context of genetic variants.☆12Updated 2 years ago
- Implementation of the AIControl paper in Julia 1.0☆17Updated 6 years ago
- Scalable analysis of large high-dimensional data☆66Updated 6 years ago
- Stress-based Graph Drawing by Stochastic Gradient Descent☆48Updated 2 years ago
- ☆20Updated 4 years ago
- ☆31Updated 4 years ago
- Multithreaded Gephi Force Atlas2 Layout in 2 or 3-d☆22Updated 5 years ago
- Creating multi-resolution embeddings and clusters from high dimensional data☆56Updated last year
- Contrastive PCA☆229Updated last month
- topological data analysis of population-scale microbiomes☆31Updated 2 years ago
- Python Wrapper for FIt-SNE☆45Updated 4 years ago
- A JavaScript implementation of Bubble Sets.☆48Updated last year
- A spectral method for assessing and combining multiple data visualizations☆50Updated 2 years ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆46Updated 2 years ago
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.☆71Updated last month
- ☆15Updated 5 years ago
- t-SNE and dynamic t-SNE in theano☆77Updated 6 years ago
- Python, R and Matlab implementation of Brown's Method to combine dependent P-values☆25Updated 7 years ago
- Systematically learn and evaluate manifolds from high-dimensional data☆103Updated last month
- An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data☆52Updated 7 years ago
- Source code for integrative nonnegative matrix factorization☆19Updated 7 years ago