Miscellaneous tools for clinical ML
☆29Oct 21, 2017Updated 8 years ago
Alternatives and similar repositories for ML-tools
Users that are interested in ML-tools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Cookbook of sql scripts for MIMIC-II☆17Dec 28, 2015Updated 10 years ago
- A torch package for learning diagnosis models from temporal patient data.☆116Aug 28, 2017Updated 8 years ago
- Introduction to MIMIC-III, the Critical Care Database☆86Jun 12, 2017Updated 8 years ago
- UMLS in Python with MongoDB.☆18Dec 7, 2018Updated 7 years ago
- ☆21Dec 9, 2016Updated 9 years ago
- a Python tool to extract and structure numeric lab test comparison statements from text☆22Jul 31, 2023Updated 2 years ago
- Predict people interest in renting specific NYC apartments. The challenge combines structured data, geolocalization, time data, free text…☆18Nov 4, 2017Updated 8 years ago
- Experiment, Storage and Visualization Framework for Machine Learning research.☆31May 19, 2021Updated 4 years ago
- ☆29Aug 3, 2021Updated 4 years ago
- Clinical spelling correction with word and character n-gram embeddings.☆75Jun 21, 2022Updated 3 years ago
- Repo for downloading and storing OMIM data☆19Oct 6, 2016Updated 9 years ago
- Basic Python 3 tools to interact with UMLS lexica☆124Jan 10, 2019Updated 7 years ago
- Clinical Concept Extraction with Contextual Word Embedding☆41May 27, 2020Updated 5 years ago
- ☆14Jun 21, 2024Updated last year
- ☆77Dec 20, 2023Updated 2 years ago
- Implementation of Modeling Joint Entity and Relation Extraction with Table Representation in EMNLP2014☆20Nov 29, 2015Updated 10 years ago
- Evaluating the reproducibility of mortality prediction studies in the MIMIC-III database☆39Apr 11, 2018Updated 7 years ago
- Classes for ClinicalTrials.gov related projects☆48Aug 13, 2019Updated 6 years ago
- An information extraction system for free-text eligibility criteria☆38Jan 12, 2019Updated 7 years ago
- Quantifying biases in BERT embeddings pretrained on MIMIC-III clinical notes☆25Mar 26, 2021Updated 4 years ago
- C++ implementation of Constant Database (CDB++)☆23Nov 12, 2010Updated 15 years ago
- Utility to help search within a set of jupyter notebooks☆16Dec 1, 2019Updated 6 years ago
- a ducttape workflow for neural machine translation☆14Mar 23, 2021Updated 5 years ago
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆344Nov 9, 2021Updated 4 years ago
- Streamlit apps on Cloud Run with Identity-Aware Proxy (IAP).☆10Mar 5, 2022Updated 4 years ago
- Dockerization of brat application☆13Jun 13, 2018Updated 7 years ago
- multilabel classification of EHR notes☆302Jul 21, 2020Updated 5 years ago
- Dataset containing 7,025 discharge summary notes from the MIMIC III dataset annotated for 7 SBDHs☆19Jun 18, 2022Updated 3 years ago
- KDD2020 paper; Identifying Sepsis Subphenotypes via Time-Aware Multi-Modal Auto-Encoder☆23Dec 17, 2020Updated 5 years ago
- Runnable morphological analysis tools from the UniMorph project☆16Nov 19, 2018Updated 7 years ago
- ☆10Aug 16, 2016Updated 9 years ago
- ☆18Dec 2, 2018Updated 7 years ago
- A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework☆46Oct 15, 2020Updated 5 years ago
- Embedding Complexity In the Data Representation Instead of In the Model (arXiv:1802.04233)☆24Feb 14, 2018Updated 8 years ago
- an unofficial Georgia Tech theme for JupyterLab☆10Jun 29, 2021Updated 4 years ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆99Updated this week
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Feb 1, 2021Updated 5 years ago
- Cataloging pharmacotherapies in clinical trial from ClinicalTrials.gov☆26Jun 17, 2016Updated 9 years ago
- Generating graph structures from OWL ontologies☆12Nov 21, 2017Updated 8 years ago