chapmanbe / negex
Automatically exported from code.google.com/p/negex
☆36Updated 2 years ago
Alternatives and similar repositories for negex:
Users that are interested in negex are comparing it to the libraries listed below
- ☆98Updated last year
- ☆53Updated 4 years ago
- Weak supervision methods for extracting real world evidence from EHRs☆33Updated 4 years ago
- An information extraction system for free-text eligibility criteria☆37Updated 6 years ago
- Classes for ClinicalTrials.gov related projects☆47Updated 5 years ago
- Platform enabling Rapid Annotation for Clinical Entity Recognition☆50Updated 3 years ago
- Clinical Text Summarization with Syntax-Based Negation and Semantic Concept Identification☆21Updated 5 years ago
- A near real-time named-entity recognizer☆59Updated 10 months ago
- Clinical Natural Language Processing using spaCy, scispacy, and medspacy☆99Updated 11 months ago
- ☆98Updated 3 years ago
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆30Updated 10 months ago
- a Python tool to extract and structure numeric lab test comparison statements from text☆22Updated last year
- Named Entity Recognition for biomedical entities☆47Updated 2 years ago
- Health knowledge graph for 157 diseases and 491 symptoms, learned from >270,000 patients' data☆100Updated 4 years ago
- Public release of the DeepPhe analytic software☆30Updated 2 years ago
- AMIA submission examining note-derived vector representations☆10Updated 2 years ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated 2 years ago
- Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work …☆102Updated 4 years ago
- Weakly supervised medical named entity classification☆72Updated 2 years ago
- A neural named entity recognition and multi-type normalization tool for biomedical text mining☆177Updated 2 years ago
- A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework☆45Updated 4 years ago
- Data and code from our "Inferring Which Medical Treatments Work from Reports of Clinical Trials", NAACL 2019. This work concerns inferrin…☆62Updated 3 years ago
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…☆65Updated 8 months ago
- Python wraper for MetaMap☆171Updated 4 years ago
- Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.☆41Updated 4 years ago
- Conversion from brat-flavored standoff to CoNLL format☆51Updated 4 years ago
- New approach to use Snomed-CT Concept using Word Embedding with Word2vec☆20Updated 6 years ago
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆32Updated last year
- Crowdsourced ground truth for medical relation extraction.☆69Updated 6 years ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆79Updated last week