babylonhealth / EHR-Rel
Biomedical concept relatedness benchmark sampled from electronic health records
☆11Updated 2 years ago
Alternatives and similar repositories for EHR-Rel:
Users that are interested in EHR-Rel are comparing it to the libraries listed below
- ☆28Updated 3 years ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆91Updated 7 months ago
- A python package for removing duplicate text in clinical notes or other documents☆36Updated 4 years ago
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…☆41Updated last year
- Code for doing machine learning with various EHRs☆21Updated last year
- Code for the paper "Knowledge Base Completion for Constructing Problem-Oriented Medical Records" at MLHC 2020☆11Updated 3 years ago
- Python package for machine learning for healthcare using a OMOP common data model☆106Updated last year
- ☆38Updated 2 years ago
- Weak supervision methods for extracting real world evidence from EHRs☆33Updated 4 years ago
- Implementation of Deep Patient Representation of Clinical Notes at Intensive Care Unit for Multi-Task Prediction☆32Updated 5 years ago
- MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…☆75Updated 2 weeks ago
- Patient Code & Text Representation Learning☆20Updated last year
- Experiments applying FIDDLE on MIMIC-III and eICU. https://doi.org/10.1093/jamia/ocaa139☆24Updated 2 years ago
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆43Updated last week
- ACES: Automatic Cohort Extraction System for Event-Streams☆27Updated this week
- Code for "Exploring Text Specific and Blackbox Fairness Algorithms in Multimodal Clinical NLP"☆13Updated last year
- Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records☆24Updated 4 years ago
- Code for BEHRT: Transformer for Electronic Health Records☆108Updated last year
- source codes based on PyTorch to analyze EHR☆132Updated last year
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆55Updated last year
- ☆36Updated 2 years ago
- A basic AMIA (American Medical Informatics Association) style compliant LaTeX paper skeleton☆19Updated 9 years ago
- ☆12Updated last year
- python code for BRLTM model☆12Updated 4 years ago
- A collection of ETLs from common data formats to Medical Event Data Standard☆26Updated 2 months ago
- ☆38Updated 2 years ago
- A simple set of MEDS polars-based ETL and transformation functions☆24Updated last month
- Targeted-BEHRT: Deep Learning for Observational Causal Inference on Longitudinal Electronic Health Records☆18Updated last year
- public code repository for paper "Health system scale language models are general purpose clinical prediction engines"☆108Updated last year
- Corresponding code for experiments described in "Predicting Clinical Outcomes Across Changing Electronic Health Records." Presented at KD…☆11Updated 7 years ago