yala / OncoTextLinks
OncoText is an information extraction service for breast pathology reports. It supports over 20 categories including DCIS, includes pretrained models, and supports flexible addition of new categories, new training data, and parsing new reports.
☆23Updated 6 years ago
Alternatives and similar repositories for OncoText
Users that are interested in OncoText are comparing it to the libraries listed below
Sorting:
- Hough CNN implementation - new implementation from scratch - based on pre-existing V-Net code.☆12Updated 8 years ago
- A production quality data pipeline for DICOM images segmentation.☆12Updated 7 years ago
- ☆29Updated 4 years ago
- U-Net for biomedical image segmentation☆12Updated 4 years ago
- A torch package for learning diagnosis models from temporal patient data.☆116Updated 7 years ago
- Code accompanying the paper "Multimodal fusion of imaging and genomics for lung cancer recurrence prediction" - Vaishnavi Subramanian, Mi…☆18Updated 5 years ago
- ☆57Updated 5 years ago
- ☆15Updated 5 years ago
- Codebase for "AutoPrognosis: Automated Clinical Prognostic Modeling via Bayesian Optimization", ICML 2018.☆56Updated 4 years ago
- Clinical Language Annotation Modeling and Processing toolkit☆16Updated 8 years ago
- Deep Learning tools for medical image and biomarker analysis☆19Updated 2 years ago
- A collection of deep learning models with a unified API.☆69Updated 2 years ago
- Automatic extraction of structured labels from radiology reports. From paper Draelos et al. "Machine-Learning-Based Multiple Abnormality …☆13Updated 3 years ago
- Website for ML4H Symposium☆22Updated last year
- The Cancer Imaging Archive (TCIA) Web Service Client Python Application☆16Updated 7 years ago
- Segmenting WSIs using Deep Convolutional Neural Networks☆19Updated 7 years ago
- Pretrained parameters for CT deep learning models.☆13Updated 5 years ago
- Biomedical concept relatedness benchmark sampled from electronic health records☆11Updated 3 years ago
- Deep learning survival models☆118Updated 2 years ago
- Failures in machine learning for medical imaging☆31Updated 3 years ago
- Weakly Supervised MRI Series Classification for the UK Biobank☆26Updated 5 years ago
- An optimized pipeline for working with Whole Slide Image (WSI) data in Tensorflow☆15Updated 4 years ago
- Survival Convolutional Neural Networks☆69Updated 2 years ago
- A High-Throughput Workflow for Preprocessing, Deep Learning Analytics and Interpretation in Digital Pathology☆40Updated 2 years ago
- Handling whole-slide images with region-level annotations.☆10Updated 6 years ago
- Statistical functions based on bootstrapping for computing confidence intervals and p-values comparing machine learning models and human …☆49Updated 3 years ago
- Automatically split the chest x-ray into two views☆19Updated last year
- Weak supervision methods for extracting real world evidence from EHRs☆34Updated 5 years ago
- ☆11Updated 8 years ago
- MIMIC preprocessing for the ICML paper "Dynamic Measurement Scheduling for Event Forecasting Using Deep RL"☆19Updated 6 years ago