yala / OncoTextLinks
OncoText is an information extraction service for breast pathology reports. It supports over 20 categories including DCIS, includes pretrained models, and supports flexible addition of new categories, new training data, and parsing new reports.
☆24Updated 7 years ago
Alternatives and similar repositories for OncoText
Users that are interested in OncoText are comparing it to the libraries listed below
Sorting:
- Hough CNN implementation - new implementation from scratch - based on pre-existing V-Net code.☆12Updated 9 years ago
- A torch package for learning diagnosis models from temporal patient data.☆116Updated 8 years ago
- patch-based gaussian mixture model☆15Updated 6 years ago
- Clinical Language Annotation Modeling and Processing toolkit☆17Updated 9 years ago
- ☆29Updated 4 years ago
- A production quality data pipeline for DICOM images segmentation.☆12Updated 7 years ago
- Codebase for "AutoPrognosis: Automated Clinical Prognostic Modeling via Bayesian Optimization", ICML 2018.☆56Updated 4 years ago
- Automatic extraction of structured labels from radiology reports. From paper Draelos et al. "Machine-Learning-Based Multiple Abnormality …☆13Updated 3 years ago
- Pretrained parameters for CT deep learning models.☆13Updated 6 years ago
- Code accompanying the paper "Multimodal fusion of imaging and genomics for lung cancer recurrence prediction" - Vaishnavi Subramanian, Mi…☆18Updated 5 years ago
- Failures in machine learning for medical imaging☆32Updated 3 years ago
- Deep Learning tools for medical image and biomarker analysis☆19Updated 2 years ago
- Biomedical concept relatedness benchmark sampled from electronic health records☆11Updated 3 years ago
- U-Net for biomedical image segmentation☆12Updated 4 years ago
- Weakly Supervised MRI Series Classification for the UK Biobank☆26Updated 6 years ago
- Patient2Vec: A Personalized Interpretable Deep Representation of the Longitudinal Electronic Health Record☆108Updated 7 years ago
- ☆15Updated 6 years ago
- Applying deep learning for very early recognition of pluripotent stem cell differentiation☆11Updated 6 years ago
- Deep learning survival models☆118Updated 3 years ago
- ☆57Updated 5 years ago
- Code for Contextual Autocomplete paper published in MLHC2020☆13Updated 4 years ago
- Medical image analysis framework merging ANTsR and deep learning☆67Updated 5 months ago
- A collection of deep learning models with a unified API.☆68Updated 3 years ago
- ☆17Updated 6 years ago
- Clinical XLNet: Modeling Sequential Clinical Notes and Predicting Prolonged Mechanical Ventilation☆49Updated 4 years ago
- Weak supervision methods for extracting real world evidence from EHRs☆34Updated 5 years ago
- DLTK Model Zoo☆113Updated 7 years ago
- ☆20Updated 3 years ago
- MIMIC preprocessing for the ICML paper "Dynamic Measurement Scheduling for Event Forecasting Using Deep RL"☆19Updated 6 years ago
- Statistical functions based on bootstrapping for computing confidence intervals and p-values comparing machine learning models and human …☆49Updated 3 years ago