yala / OncoText
OncoText is an information extraction service for breast pathology reports. It supports over 20 categories including DCIS, includes pretrained models, and supports flexible addition of new categories, new training data, and parsing new reports.
☆22Updated 6 years ago
Alternatives and similar repositories for OncoText:
Users that are interested in OncoText are comparing it to the libraries listed below
- Clinical Language Annotation Modeling and Processing toolkit☆16Updated 8 years ago
- ☆28Updated 3 years ago
- Weak supervision methods for extracting real world evidence from EHRs☆33Updated 4 years ago
- Hough CNN implementation - new implementation from scratch - based on pre-existing V-Net code.☆11Updated 8 years ago
- Code for the paper "Knowledge Base Completion for Constructing Problem-Oriented Medical Records" at MLHC 2020☆11Updated 3 years ago
- clinical free text de-identification software☆41Updated 6 years ago
- The Baseline Site Selection Tool implements simulation tools for clinical trial enrollment.☆18Updated 2 years ago
- Statistical functions based on bootstrapping for computing confidence intervals and p-values comparing machine learning models and human …☆49Updated 2 years ago
- An interactive machine learning framework for large histopathology images.☆20Updated last year
- Learning from Discharge Summaries to extract mentioned diagnoses using Hierarchical Attention Model☆34Updated 7 years ago
- Website for ML4H Symposium☆22Updated 7 months ago
- ☆15Updated 4 years ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated 2 years ago
- A torch package for learning diagnosis models from temporal patient data.☆113Updated 7 years ago
- Medical Similarity Dataset creation from SNOMED☆27Updated 2 years ago
- Handling whole-slide images with region-level annotations.☆9Updated 6 years ago
- Failures in machine learning for medical imaging☆30Updated 2 years ago
- A production quality data pipeline for DICOM images segmentation.☆12Updated 6 years ago
- Biomedical concept relatedness benchmark sampled from electronic health records☆11Updated 2 years ago
- Data structures and code to read/write BioC XML and Json.☆31Updated last year
- Pretrained parameters for CT deep learning models.☆12Updated 5 years ago
- Data stories☆10Updated 6 years ago
- Embedding Complexity In the Data Representation Instead of In the Model (arXiv:1802.04233)☆24Updated 6 years ago
- Code for ICML 2021 paper "Regularizing towards Causal Invariance: Linear Models with Proxies" (ICML 2021)☆11Updated 2 years ago
- Multifactorial modeling of response to checkpoint inhibitor immunotherapy from tumor, immune, and clinical features☆14Updated 6 years ago
- Platform enabling Rapid Annotation for Clinical Entity Recognition☆50Updated 2 years ago
- Codebase for "AutoPrognosis: Automated Clinical Prognostic Modeling via Bayesian Optimization", ICML 2018.☆56Updated 4 years ago
- An R package for evaluating phenotype algorithms.☆17Updated 3 months ago
- Code to study the generalisability of benchmark models on non-stationary EHRs.☆14Updated 5 years ago
- Weakly Supervised MRI Series Classification for the UK Biobank☆25Updated 5 years ago