MUSC-TBIC / etude-engine
ETUDE (Evaluation Tool for Unstructured Data and Extractions) is a Python-based tool that provides consistent evaluation options across a range of annotation schemata and corpus formats
☆12Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for etude-engine
- Master Documentation Repository for OHNLP Projects Related to Coronavirus Disease 2019☆21Updated last year
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆64Updated this week
- The Leo framework - The VINCI-developed Natural Language Processing(NLP) infrastructure using UIMA.☆22Updated last year
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆32Updated 10 months ago
- Classes for ClinicalTrials.gov related projects☆48Updated 5 years ago
- ☆98Updated last year
- Public release of the DeepPhe analytic software☆30Updated last year
- Basic Python 3 tools to interact with UMLS lexica☆120Updated 5 years ago
- Python wraper for MetaMap☆170Updated 4 years ago
- Provides backbone infrastructure elements for OHNLP toolsets.☆14Updated this week
- Resourses of pre-trained word representations on clinical texts.☆12Updated 5 years ago
- A near real-time named-entity recognizer☆59Updated 5 months ago
- init☆11Updated 2 months ago
- A simple REST-server around ctakes clinical pipeline.☆30Updated 7 years ago
- ☆12Updated last week
- NLP2FHIR: A FHIR-based Clinical Data Normalization Pipeline and Its Applications☆59Updated 2 years ago
- A repository of code samples in various languages that show how to use the UMLS Terminology Services REST API☆172Updated 2 years ago
- Health NLP Examples☆88Updated 6 years ago
- Sample code that demonstrates the use of the NCBO REST services☆40Updated 10 months ago
- This repository contains data and code for the paper"Comparing deep learning and concept extraction based methods for patient phenotyping…☆21Updated 6 years ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated last year
- New approach to use Snomed-CT Concept using Word Embedding with Word2vec☆20Updated 5 years ago
- Mapping the MIMIC-III database to the OMOP schema☆128Updated 8 months ago
- A Serverless Text Annotation Tool for Corpus Development☆54Updated last month
- A basic AMIA (American Medical Informatics Association) style compliant LaTeX paper skeleton☆19Updated 8 years ago
- Deduce: de-identification method for Dutch medical text☆52Updated 2 weeks ago
- Repository for managing python tools that model standoff annotations for i2b2 2014 challenge☆14Updated 9 years ago
- Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.☆36Updated 4 years ago
- These python scripts connect to the Unified Medical Language System (UMLS) database and translate the ontologies into RDF/OWL files. This…☆84Updated 2 months ago