MUSC-TBIC / etude-engine
ETUDE (Evaluation Tool for Unstructured Data and Extractions) is a Python-based tool that provides consistent evaluation options across a range of annotation schemata and corpus formats
☆12Updated 2 years ago
Alternatives and similar repositories for etude-engine:
Users that are interested in etude-engine are comparing it to the libraries listed below
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆67Updated 4 months ago
- Python wraper for MetaMap☆171Updated 4 years ago
- ☆98Updated last year
- Resourses of pre-trained word representations on clinical texts.☆12Updated 5 years ago
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆32Updated last year
- Master Documentation Repository for OHNLP Projects Related to Coronavirus Disease 2019☆21Updated 2 years ago
- Classes for ClinicalTrials.gov related projects☆47Updated 5 years ago
- A repository of code samples in various languages that show how to use the UMLS Terminology Services REST API☆172Updated 2 years ago
- Public release of the DeepPhe analytic software☆30Updated 2 years ago
- Basic Python 3 tools to interact with UMLS lexica☆123Updated 6 years ago
- Mapping the MIMIC-III database to the OMOP schema☆132Updated last year
- Sample code that demonstrates the use of the NCBO REST services☆44Updated last year
- Health NLP Examples☆88Updated 6 years ago
- The Leo framework - The VINCI-developed Natural Language Processing(NLP) infrastructure using UIMA.☆23Updated last year
- Transformers for Clinical NLP☆24Updated 2 months ago
- A simple REST-server around ctakes clinical pipeline.☆30Updated 8 years ago
- This repository contains data and code for the paper"Comparing deep learning and concept extraction based methods for patient phenotyping…☆21Updated 6 years ago
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…☆65Updated 8 months ago
- ☆14Updated 4 months ago
- Provides backbone infrastructure elements for OHNLP toolsets.☆14Updated 4 months ago
- A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework☆45Updated 4 years ago
- This is a repository for annotation data for the THYME Project, a clinical natural language processing project dedicated to extracting us…☆37Updated 9 years ago
- NLP2FHIR: A FHIR-based Clinical Data Normalization Pipeline and Its Applications☆60Updated 2 years ago
- Weakly supervised medical named entity classification☆73Updated 2 years ago
- Automatically exported from code.google.com/p/negex☆36Updated 2 years ago
- Open-source test generation SDK for LLM applications. Access curated test sets. Build context-specific test sets and collaborate with sub…☆17Updated 2 weeks ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated 2 years ago
- Repository for managing python tools that model standoff annotations for i2b2 2014 challenge☆14Updated 9 years ago
- Source code used to develop the OHDSI knowledge base of sources with information relevant for assessing assocations between drugs and hea…☆55Updated 6 years ago
- A near real-time named-entity recognizer☆59Updated 10 months ago