stemangiola / tidybulk
Brings bulk and pseudobulk transcriptomics to the tidyverse
☆165Updated last month
Related projects ⓘ
Alternatives and complementary repositories for tidybulk
- Seurat meets tidyverse. The best of both worlds.☆157Updated 3 months ago
- Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.☆117Updated 4 years ago
- R data package for annotating/converting Gene IDs☆162Updated last year
- 🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R htt…☆147Updated last month
- make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.☆187Updated 8 months ago
- Quantify and interpret divers of variation in multilevel gene expression experiments☆60Updated last week
- Course material for CSAMA: Statistical Data Analysis for Genome Scale Biology☆91Updated 4 months ago
- MSigDB gene sets for multiple organisms in a tidy data format☆70Updated last year
- R package to infer biological activities from omics data using a collection of methods.☆193Updated last month
- pathfindR: Enrichment Analysis Utilizing Active Subnetworks☆184Updated last month
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆160Updated last month
- Visualization of Functional Enrichment Result☆232Updated 2 weeks ago
- Devel repository for minfi☆60Updated 6 months ago
- The package wrapping the book, for deployment via the Bioconductor build system.☆79Updated 2 weeks ago
- Make Interactive Complex Heatmaps☆130Updated 8 months ago
- Easily install and load packages from the tidyomcis ecosystem☆63Updated 8 months ago
- Contribute Packages to Bioconductor☆135Updated last year
- Clone of the Bioconductor repository for the scater package.☆95Updated 4 months ago
- Publication-quality sequence logos in R☆208Updated last month
- Testing differences in cell type proportions from single-cell data.☆94Updated last week
- Simplify functional enrichment results☆111Updated 2 months ago
- Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…☆104Updated last year
- EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment☆52Updated last year
- An R interface to enrichR☆77Updated 7 months ago
- Clone of the Bioconductor repository for the SingleR package.☆177Updated this week
- Gene set variation analysis☆200Updated last week
- gwasrapidd: an R package to query, download and wrangle GWAS Catalog data☆92Updated 11 months ago
- ☆68Updated 2 years ago
- ggplot2 version of heatmap☆84Updated last year
- Visualizing transcript structure and annotation using ggplot2☆131Updated 2 months ago