Alternatives and similar repositories for ApE

Users that are interested in ApE are comparing it to the libraries listed below

• pydna-group / pydna
  Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…
  ☆206Updated this week
• mmcguffi / pLannotate
  Webserver and command line tool for annotating engineered plasmids
  ☆131Updated 2 months ago
• IsaacLuo / SnapGeneFileReader
  A Python project to read and write Snapgene *.dna into dict, json, and biopython object.
  ☆44Updated 5 years ago
• Edinburgh-Genome-Foundry / DnaCauldron
  Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
  ☆62Updated 4 months ago
• Lattice-Automation / seqfold
  nucleic acid folding
  ☆103Updated last month
• rcedgar / muscle
  Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, e…
  ☆251Updated 3 weeks ago
• Global-Biofoundries-Alliance / SynBioPython
  General low-level API
  ☆50Updated 3 years ago
• CovertLab / WholeCellEcoliRelease
  Release of the whole cell E. coli model.
  ☆71Updated 9 months ago
• gecrooks / weblogo
  WebLogo 3: Sequence Logos redrawn
  ☆152Updated 4 months ago
• manulera / OpenCloning
  An Open-Source web application to plan and document cloning and genome engineering
  ☆36Updated last week
• SysBioChalmers / RAVEN
  The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
  ☆113Updated 2 weeks ago
• Lattice-Automation / primers
  A PCR primer tool for DNA assembly flows
  ☆33Updated last year
• ponnhide / sangerseq_viewer
  sangerseq_viewer is a python package to automatically visualize Sanger sequencing results and the corresponding annotated sequence map.
  ☆37Updated last year
• opencobra / memote
  memote – the genome-scale metabolic model test suite
  ☆140Updated last month
• SBRG / bigg_models
  The BiGG Models website server
  ☆83Updated 5 years ago
• paulstothard / sequence_manipulation_suite
  A collection of simple JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. The Sequence Manipu…
  ☆81Updated 10 months ago
• ebi-jdispatcher / webservice-clients
  A collection of Web Service Clients to consume EBI's Job Dispatcher tools via REST APIs
  ☆54Updated last year
• SysBioChalmers / Human-GEM
  The generic genome-scale metabolic model of Homo sapiens
  ☆122Updated 3 weeks ago
• jbkinney / logomaker
  Software for the visualization of sequence-function relationships
  ☆202Updated 4 months ago
• wrpearson / fasta36
  Git repository for FASTA36 sequence comparison software
  ☆123Updated 2 months ago
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆153Updated 10 months ago
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆42Updated 3 weeks ago
• jclachance / BOFdat
  Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
  ☆27Updated 2 years ago
• ebi-webcomponents / nightingale
  Data visualisation web components for the life sciences.
  ☆135Updated last week
• ViennaRNA / forna
  Create force-directed graphs of RNA secondary structures.
  ☆106Updated 5 years ago
• primer3-org / primer3
  Primer3 is a command line tool to select primers for polymerase chain reaction (PCR).
  ☆269Updated 4 months ago
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆78Updated 2 weeks ago
• SysBioChalmers / yeast-GEM
  The consensus GEM for Saccharomyces cerevisiae
  ☆113Updated 2 weeks ago
• cdanielmachado / reframed
  ReFramed: metabolic modeling package
  ☆61Updated 2 weeks ago
• AnimaTardeb / G4Hunter
  G4Hunter (2012_2015)- IECB - Bordeaux
  ☆16Updated 5 years ago