Alternatives and similar repositories for ApE

Users that are interested in ApE are comparing it to the libraries listed below

• pydna-group / pydna
  Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…
  ☆215Updated last week
• mmcguffi / pLannotate
  Webserver and command line tool for annotating engineered plasmids
  ☆136Updated 6 months ago
• IsaacLuo / SnapGeneFileReader
  A Python project to read and write Snapgene *.dna into dict, json, and biopython object.
  ☆45Updated 5 years ago
• SysBioChalmers / RAVEN
  The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
  ☆121Updated 3 weeks ago
• Lattice-Automation / seqfold
  nucleic acid folding
  ☆110Updated 5 months ago
• gecrooks / weblogo
  WebLogo 3: Sequence Logos redrawn
  ☆154Updated last week
• libnano / primer3-py
  Simple oligo analysis and primer design
  ☆190Updated 2 weeks ago
• manulera / OpenCloning
  An Open-Source web application to plan and document cloning and genome engineering
  ☆43Updated last week
• Lattice-Automation / primers
  A PCR primer tool for DNA assembly flows
  ☆33Updated last year
• rcedgar / muscle
  Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, e…
  ☆268Updated last month
• ViennaRNA / forna
  Create force-directed graphs of RNA secondary structures.
  ☆110Updated 5 years ago
• paulstothard / sequence_manipulation_suite
  A collection of simple JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. The Sequence Manipu…
  ☆87Updated last year
• opencobra / memote
  memote – the genome-scale metabolic model test suite
  ☆144Updated 5 months ago
• Edinburgh-Genome-Foundry / DnaCauldron
  Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
  ☆64Updated 8 months ago
• wrpearson / fasta36
  Git repository for FASTA36 sequence comparison software
  ☆128Updated 2 months ago
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆178Updated last year
• SysBioChalmers / Human-GEM
  The generic genome-scale metabolic model of Homo sapiens
  ☆125Updated 2 weeks ago
• SBRG / bigg_models
  The BiGG Models website server
  ☆88Updated 6 years ago
• bionumpy / bionumpy
  Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/
  ☆291Updated 7 months ago
• mckennalab / Circuitseq
  Nanopore Plasmid Sequencing
  ☆34Updated 2 years ago
• TeselaGen / tg-oss
  Teselagen Open Source modules
  ☆84Updated last week
• tyhho / OT-2_3D_Designs
  3D Designs to be used with OT-2
  ☆17Updated 5 years ago
• cdanielmachado / reframed
  ReFramed: metabolic modeling package
  ☆63Updated 4 months ago
• Benjamin-Lee / CodonAdaptationIndex
  Python Implementation of Codon Adaption Index
  ☆37Updated 3 years ago
• jrjhealey / bioinfo-tools
  Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.
  ☆63Updated 5 years ago
• s-will / LocARNA
  Alignment of RNAs
  ☆25Updated last year
• bxlab / bx-python
  Tools for manipulating biological data, particularly multiple sequence alignments
  ☆159Updated last week
• primer3-org / primer3
  Primer3 is a command line tool to select primers for polymerase chain reaction (PCR).
  ☆275Updated 8 months ago
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆44Updated 3 weeks ago
• ViennaRNA / forgi
  An RNA manipulation library.
  ☆56Updated last year