sirselim / Intro_to_GWASLinks
An introductory workshop to GWAS analysis using PLINK and R
☆15Updated 10 years ago
Alternatives and similar repositories for Intro_to_GWAS
Users that are interested in Intro_to_GWAS are comparing it to the libraries listed below
Sorting:
- Scripts for implementing the Tractor pipeline☆53Updated 4 months ago
- A wrapper for liftOver for converting plink genotype data between different genome reference builds☆52Updated 6 years ago
- R package for quality control of plink genetic datasets☆63Updated last month
- PrediXcan Project☆115Updated 3 years ago
- Make LocusZoom-like plots with your own LD matrix.☆48Updated 3 years ago
- A tutorial on how to run basic polygenic risk score analysis☆84Updated 2 years ago
- ☆102Updated 3 years ago
- Main ricopili repo for public releases☆51Updated 9 months ago
- An R package for performing STAAR procedure in whole-genome sequencing studies☆97Updated 11 months ago
- topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…☆71Updated last month
- A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.☆52Updated 10 months ago
- methods for functional summary-based imputation☆91Updated 3 years ago
- Analyses conducting GWAS across the UKBB diverse superpopulations☆62Updated 2 months ago
- R package to perform Bayesian Genome-Wide Association Studies☆41Updated 2 years ago
- Read PLINK BED/BIM/FAM files into R☆44Updated 4 years ago
- ☆30Updated 4 years ago
- Code for the in-dev PrediXcan Project☆28Updated 3 years ago
- Harmonise GWAS summary statistics against a reference VCF☆41Updated 4 years ago
- A tutorial for running Tractor and Tractor-Mix on toy datasets, including step-by-step instructions for preparing data, estimating PCs an…☆11Updated 2 weeks ago
- ☆40Updated 7 years ago
- Scripts for GWAS association and metaanalysis☆43Updated 5 years ago
- Statistical tools for Quantitative Genetic Analyses☆38Updated last month
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆35Updated 6 months ago
- Visualization of Colocalization Between eQTL and GWAS Data☆86Updated 3 years ago
- Manhattan++☆28Updated last year
- Genotype-based Prediction (GenoPred)☆76Updated 3 weeks ago
- Individual-Level, Summary-Level and Single-Step Bayesian Regression Models for Genomic Prediction and Genome-Wide Association Studies☆55Updated 4 months ago
- Partners Biobank genomics data QC☆30Updated 5 years ago
- An R package for creating mirrored Manhattan plots☆18Updated 3 years ago
- Pariwise analysis of GWAS☆46Updated 7 years ago