An MCP server for scRNA-Seq analysis with natural language!
☆15Jul 10, 2025Updated last year
Alternatives and similar repositories for scmcp
Users that are interested in scmcp are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MCP server for single cell analysis☆12May 15, 2025Updated last year
- Cookiecutter profile for making a NextFlow-based bioinformatics tool☆17Jul 8, 2024Updated 2 years ago
- ☆50Jul 15, 2026Updated last week
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆12Dec 6, 2024Updated last year
- Host your documentation easily on Notion☆11Oct 30, 2022Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Automatically annotate cell types, consistently across samples.☆25Jul 13, 2026Updated last week
- ☆18Updated this week
- ☆14May 7, 2025Updated last year
- Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data☆134May 8, 2026Updated 2 months ago
- A tool used to cut adapter / qc / trimming / split / statistics for fastq data, it was developed in C.☆10Apr 9, 2018Updated 8 years ago
- Code and Data Availability for Single cell transcriptomics reveals a signaling roadmap coordinating endoderm and mesoderm lineage diversi…☆10Apr 16, 2020Updated 6 years ago
- .h5mu files interface for Seurat☆34Nov 28, 2023Updated 2 years ago
- A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing☆35Nov 4, 2023Updated 2 years ago
- ☆13Dec 16, 2021Updated 4 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Gain biological insights using LLM.☆15Jan 26, 2026Updated 5 months ago
- Fast algorithms for GLM-PCA.☆17Mar 12, 2025Updated last year
- ☆16May 12, 2026Updated 2 months ago
- Implementation of Seurat's SpatialFeaturePlot to allow blended expression☆11Feb 28, 2025Updated last year
- ☆14Jul 22, 2025Updated 11 months ago
- Vaeda method for computational doublet annotation☆20Feb 1, 2026Updated 5 months ago
- A high-performance modification detection tool in Rust☆62Feb 8, 2026Updated 5 months ago
- https://sparrow-pipeline.readthedocs.io/en/latest/☆34Updated this week
- physics-informed neural network based method for solving single-cell population dynamics☆17Jun 23, 2026Updated 3 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ggideogram is a ggplot2 extension package for drawing chromosome diagrams☆18Nov 29, 2024Updated last year
- ☆29Apr 1, 2025Updated last year
- ☆14Mar 11, 2022Updated 4 years ago
- A tutorial on how to create bioinformatics pipelines as bash scripts, Makefiles and using tools like Nextflow.☆17Nov 14, 2022Updated 3 years ago
- ☆19Apr 24, 2022Updated 4 years ago
- ☆34May 31, 2026Updated last month
- Single cell analysis in Javascript☆23Nov 28, 2025Updated 7 months ago
- 一个轻量的ai websearch的自建个人方案,支持baidu/tavily/exa api(支持api 池化使用), bing/ddg 和学术搜索引擎 ,内置sqlite 缓存和llm 摘要能力,支持litellm claude websearch 扩展接入☆15Updated this week
- Single Rust: Pioneering single-cell analysis with Rust's concurrency for scalable, high-throughput pipelines. 🧬🚀☆103Nov 24, 2025Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- UNet script, model, sample data☆14Feb 19, 2025Updated last year
- A cookiecutter template for creating MCP (Model Control Protocol) servers☆22Jul 12, 2026Updated last week
- ☆15Aug 5, 2022Updated 3 years ago
- ☆21Sep 8, 2023Updated 2 years ago
- Web app for automated, systematic, and integrated RNA-seq differential expression analysis☆16May 1, 2026Updated 2 months ago
- ☆18Nov 20, 2025Updated 8 months ago
- Nextflow workshop materials November 2025☆19Jun 9, 2026Updated last month