An MCP server for scRNA-Seq analysis with natural language!
☆15Jul 10, 2025Updated last year
Alternatives and similar repositories for scmcp
Users that are interested in scmcp are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MCP server for single cell analysis☆12May 15, 2025Updated last year
- Cookiecutter profile for making a NextFlow-based bioinformatics tool☆17Jul 8, 2024Updated 2 years ago
- Shadow objects for AnnData and MuData (experimental)☆11Feb 28, 2025Updated last year
- ☆51Jul 22, 2026Updated 2 weeks ago
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆12Dec 6, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Vaeda method for computational doublet annotation☆20Feb 1, 2026Updated 6 months ago
- Host your documentation easily on Notion☆11Oct 30, 2022Updated 3 years ago
- Automatically annotate cell types, consistently across samples.☆27Aug 3, 2026Updated last week
- Identification of viral RdRPs in single-cell RNA sequencing data☆14Mar 12, 2026Updated 4 months ago
- ☆18Jul 21, 2026Updated 3 weeks ago
- ☆14May 7, 2025Updated last year
- A tool used to cut adapter / qc / trimming / split / statistics for fastq data, it was developed in C.☆10Apr 9, 2018Updated 8 years ago
- Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data☆134Updated this week
- Code and Data Availability for Single cell transcriptomics reveals a signaling roadmap coordinating endoderm and mesoderm lineage diversi…☆10Apr 16, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- .h5mu files interface for Seurat☆34Nov 28, 2023Updated 2 years ago
- ☆13Aug 3, 2026Updated last week
- A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing☆35Nov 4, 2023Updated 2 years ago
- ☆13Dec 16, 2021Updated 4 years ago
- Gain biological insights using LLM.☆14Jan 26, 2026Updated 6 months ago
- Fast algorithms for GLM-PCA.☆17Mar 12, 2025Updated last year
- ☆17May 12, 2026Updated 2 months ago
- ☆14Jul 22, 2025Updated last year
- Implementation of Seurat's SpatialFeaturePlot to allow blended expression☆11Feb 28, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- https://sparrow-pipeline.readthedocs.io/en/latest/☆34Jul 31, 2026Updated last week
- physics-informed neural network based method for solving single-cell population dynamics☆17Jun 23, 2026Updated last month
- ☆29Apr 1, 2025Updated last year
- A high-performance modification detection tool in Rust☆62Feb 8, 2026Updated 6 months ago
- ☆11Mar 8, 2026Updated 5 months ago
- ☆14Mar 11, 2022Updated 4 years ago
- A tutorial on how to create bioinformatics pipelines as bash scripts, Makefiles and using tools like Nextflow.☆17Nov 14, 2022Updated 3 years ago
- Single cell analysis in Javascript☆23Nov 28, 2025Updated 8 months ago
- ☆35May 31, 2026Updated 2 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- 一个轻量的ai websearch的自建个人方案,支持baidu/tavily/exa api(支持api 池化使用), bing/ddg 和学术搜索引擎 ,内置sqlite 缓存和llm 摘要能力,支持litellm claude websearch 扩展接入☆19Aug 2, 2026Updated last week
- Single Rust: Pioneering single-cell analysis with Rust's concurrency for scalable, high-throughput pipelines. 🧬🚀☆103Nov 24, 2025Updated 8 months ago
- UNet script, model, sample data☆14Feb 19, 2025Updated last year
- ☆14May 3, 2026Updated 3 months ago
- ☆11Mar 3, 2025Updated last year
- A cookiecutter template for creating MCP (Model Control Protocol) servers☆22Jul 12, 2026Updated 3 weeks ago
- ☆15Aug 5, 2022Updated 4 years ago