Alternatives and similar repositories for CaDrA

Users that are interested in CaDrA are comparing it to the libraries listed below

• bioinformatics-core-shared-training / Managing-your-research-data
  Course on good principles & practices in Data Management (https://tinyurl.com/cruk-myrd)
  ☆18Updated 2 years ago
• stephenslab / mashr-paper
  Multivariate adaptive shrinkage methods used for analysis GTEx data in Urbut et al (2017).
  ☆12Updated 7 years ago
• AlexsLemonade / RNA-Seq-Exercises
  Exercises for training scientists to perform some RNA-seq analyses.
  ☆11Updated 5 years ago
• NIH-HPC / snakemake-class
  Class materials for the NIH HPC snakemake class
  ☆15Updated 11 months ago
• kstawiski / OmicSelector
  OmicSelector - Environment, docker-based application and R package for biomarker signiture selection (feature selection) & deep learning …
  ☆35Updated 2 weeks ago
• yuvallb / CaSTLe
  Classification of Single cells by Transfer Learning
  ☆10Updated 4 years ago
• greenelab / onboarding
  Onboarding materials for the Greene Lab
  ☆31Updated 3 weeks ago
• WebDataScience / GUIdock
  ☆25Updated 9 years ago
• bjcairns / ukbschemas
  Use R to generate a database containing the UK Biobank data schemas from http://biobank.ctsu.ox.ac.uk/crystal/schema.cgi
  ☆20Updated 4 years ago
• liuqivandy / scRNABatchQC
  ☆12Updated 4 years ago
• datacarpentry / organization-genomics
  Project Organization and Management for Genomics
  ☆25Updated this week
• federicomarini / ideal
  Interactive Differential Expression AnaLysis - DE made accessible and reproducible
  ☆30Updated 4 months ago
• mararie / lionessR
  Single sample network reconstruction in R
  ☆23Updated 5 years ago
• waldronlab / PublicDataResources
  Public data resources and Bioconductor: The goal of this workshop is to introduce Bioconductor packages for finding, accessing, and using…
  ☆14Updated 3 months ago
• BioinformaticsFMRP / TCGAbiolinksGUI
  TCGAbiolinksGUI code development for R/Bioconductor submission http://tcgabiolinks.fmrp.usp.br:3838/
  ☆36Updated 4 years ago
• Kayla-Morrell / CreateAPackage
  The vignette provided has a basic sketch of the steps we interactively will go through to build a package with devtools, explains version…
  ☆12Updated 5 years ago
• waldronlab / TCGAutils
  Toolbox package for organizing and working with TCGA data
  ☆28Updated last month
• bihealth / sodar-server
  SODAR: System for Omics Data Access and Retrieval
  ☆15Updated this week
• seandavi / Orchestra
  workshop platform provider for running docker containers on kubernetes
  ☆19Updated 3 years ago
• NCBI-Hackathons / PrecisionMedicineToolkit
  Search public databases for given genotypic information
  ☆11Updated 7 years ago
• bwlewis / 1000_genomes_examples
  Examples using R and 1000 genomes data
  ☆28Updated 4 years ago
• YeoLab / qtools
  qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python
  ☆21Updated last year
• boutroslab / HTSvis
  A web app for exploratory data analysis of high-throughput screens (HTS)
  ☆17Updated 6 years ago
• idekerlab / ddot
  Toolkit for constructing, analyzing, and visualizing data-driven ontologies
  ☆17Updated 2 years ago
• broadinstitute / dropviz
  Shiny app for visualization, exploration of mouse brain single cell gene expression
  ☆11Updated 6 years ago
• vals / python-gprofiler
  ☆12Updated 6 years ago
• clindet / anor
  anor: an annotation and visualization system based on R and Shiny framework
  ☆33Updated 5 years ago
• omicsCore / SEQprocess
  SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package
  ☆17Updated 5 years ago
• Bohdan-Khomtchouk / shinyheatmap
  Web application for enormous biological heatmaps
  ☆66Updated 5 years ago
• stephenturner / kgp
  1000 Genomes Project Metadata R Package
  ☆20Updated 2 years ago