Alternatives and similar repositories for CaDrA

Users that are interested in CaDrA are comparing it to the libraries listed below

• AlexsLemonade / RNA-Seq-Exercises
  Exercises for training scientists to perform some RNA-seq analyses.
  ☆11Updated 5 years ago
• rnabioco / practical-data-analysis
  Short course using RStudio for biological data analysis
  ☆14Updated 2 years ago
• Caleydo / ordino
  Target discovery platform for exploring rankings of genes, disease models, and other entities. @JKU-ICG @datavisyn
  ☆12Updated last year
• niaid / baseline
  Reproducible workflows for the data analysis of "Baseline" project
  ☆9Updated 5 years ago
• HCBravoLab / metagenomeFeatures
  R package for annotating metagenomic datasets with taxonomic information
  ☆10Updated 5 years ago
• seandavi / Orchestra
  workshop platform provider for running docker containers on kubernetes
  ☆19Updated 3 years ago
• MonashBioinformaticsPlatform / bio-ansible
  Proof of concept to use ansible + Lmod to deploy a bioinformatics server
  ☆24Updated 3 weeks ago
• bioinformatics-core-shared-training / Managing-your-research-data
  Course on good principles & practices in Data Management (https://tinyurl.com/cruk-myrd)
  ☆18Updated 2 years ago
• grst / reportsrender
  Render HTML reports from parametrized jupyter notebooks or Rmarkdown documents.
  ☆9Updated 7 months ago
• NIH-HPC / snakemake-class
  Class materials for the NIH HPC snakemake class
  ☆16Updated 9 months ago
• EBISPOT / GWAS_Catalog-workshop
  Training material for the GWAS Catalog REST API workshop
  ☆13Updated 2 years ago
• idekerlab / ddot
  Toolkit for constructing, analyzing, and visualizing data-driven ontologies
  ☆17Updated 2 years ago
• Bohdan-Khomtchouk / shinyheatmap
  Web application for enormous biological heatmaps
  ☆66Updated 4 years ago
• kstawiski / OmicSelector
  OmicSelector - Environment, docker-based application and R package for biomarker signiture selection (feature selection) & deep learning …
  ☆35Updated 7 months ago
• greenelab / generic-expression-patterns
  Distinguishing between generic and experiment-specific gene expression signals.
  ☆12Updated 2 years ago
• datacarpentry / organization-genomics
  Project Organization and Management for Genomics
  ☆24Updated last week
• tidytranscriptomics-workshops / bioc2022_tidytranscriptomics
  Workshop About Tidy Transcriptomics for Single-cell RNA Sequencing Analyses
  ☆9Updated 2 years ago
• BaderLab / EnrichmentMapApp
  The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.
  ☆34Updated 8 months ago
• liuqivandy / scRNABatchQC
  ☆12Updated 4 years ago
• Xinglab / PEGASAS
  Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)
  ☆19Updated 3 years ago
• tgirke / longevityTools
  Analysis tools for longevity research
  ☆19Updated 7 years ago
• stephenslab / mashr-paper
  Multivariate adaptive shrinkage methods used for analysis GTEx data in Urbut et al (2017).
  ☆12Updated 7 years ago
• JhuangLab / BioInstaller
  A comprehensive R package to construct interactive and reproducible biological data analysis applications based on the R platform
  ☆56Updated 2 years ago
• boutroslab / HTSvis
  A web app for exploratory data analysis of high-throughput screens (HTS)
  ☆17Updated 6 years ago
• bihealth / scelvis
  SCelVis - web-based visualization of single-cell data. Demo
  ☆21Updated last year
• fredhutchio / tfcb_2019
  class materials for MCB517A through UW/Fred Hutch
  ☆12Updated 5 years ago
• greenelab / onboarding
  Onboarding materials for the Greene Lab
  ☆31Updated 7 months ago
• thelovelab / fishpond
  Differential expression and allelic analysis, nonparametric statistics
  ☆29Updated 5 months ago
• OSU-BMBL / IRIS
  A Shiny web server for interactive visualization and analysis of RNA-seq data
  ☆23Updated 4 years ago
• clindet / anor
  anor: an annotation and visualization system based on R and Shiny framework
  ☆33Updated 5 years ago