Candidate Drivers Analysis: Multi-Omic Search for Candidate Drivers of Functional Signatures
☆24Oct 13, 2025Updated last year
Alternatives and similar repositories for CaDrA
Users that are interested in CaDrA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- rCASC: reproducible Classification Analysis of Single Cell Sequencing Data☆16Apr 15, 2025Updated last year
- A Shiny App for Interactive Multi-OMICS Cancer Data Visualization and analysis☆22Feb 14, 2024Updated 2 years ago
- R package for plotting 3D graphical visualization of multi-omics data.☆27Mar 16, 2022Updated 4 years ago
- Toolbox package for organizing and working with TCGA data☆31Updated this week
- code implementing methods for pooling bulk and single cell data and FISH data for copy number deconvolution☆10Jan 31, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Deconvolution of seed effects from gene effects in large scale RNAi screens☆13May 18, 2018Updated 8 years ago
- Shareable project for: Decomposing Oncogenic Transcriptional Signatures to Generate Maps of Divergent Cellular States☆10Nov 11, 2020Updated 5 years ago
- Research project☆27Dec 18, 2021Updated 4 years ago
- single cell and bulk RNASeq analysis scripts☆13Jan 13, 2022Updated 4 years ago
- Detecting cancer subtypes with machine learning.☆10Feb 5, 2020Updated 6 years ago
- ☆10Nov 5, 2023Updated 3 years ago
- ☆18Oct 25, 2014Updated 12 years ago
- Semi-parametric simulation of bulk and single cell RNA-seq data☆10Nov 17, 2024Updated last year
- An R Package for Geneset Enrichment Workflows☆79Aug 21, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Superseded by https://github.com/MD-Anderson-Bioinformatics/BatchEffectsPackage☆12Aug 13, 2020Updated 6 years ago
- XEnograft Visualization & Analysis☆11Oct 18, 2025Updated last year
- Python version of PHLAWD☆23Oct 28, 2024Updated 2 years ago
- Making phylogenies for a list of fish species☆10Mar 16, 2024Updated 2 years ago
- ☆27Jun 5, 2025Updated last year
- A Nextflow Genome-Wide Association Study (GWAS) Pipeline☆36Jul 30, 2026Updated 3 months ago
- Code used for biomarker discovery using party (building conditional random forests)☆15May 18, 2018Updated 8 years ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆11Jan 21, 2024Updated 2 years ago
- An Automated RNASeq Analysis Pipeline (Differential expression to gene enrichment)☆10Oct 25, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- EasyMKL☆14Jun 12, 2018Updated 8 years ago
- ☆17Oct 20, 2023Updated 3 years ago
- Introduction to large scale computing and data wrangling with hands-on tutorials☆16Sep 1, 2026Updated 2 months ago
- KiMONo is a network inference tool for multi-omics datasets. The multi-omics network is calculated by sparse-group-LASSO regression and c…☆11Nov 21, 2022Updated 3 years ago
- A suite of scientific workflows to assess metrics to compare efficacy of protein-based tumor deconvolution algorithms.☆16Jul 6, 2026Updated 4 months ago
- Tool for DNA species identification based on variation in short k-mer frequencies☆10Aug 4, 2026Updated 3 months ago
- cyclone☆19Jul 21, 2015Updated 11 years ago
- ☆13Jan 29, 2025Updated last year
- Cute things for ggplot2.☆29May 14, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Haplotype-aware Hidden Markov Models for detecting CNVs from bulk RNA-seq☆13Apr 2, 2024Updated 2 years ago
- An R/Bioconfuctor package for association analysis of genomic regions based on permutation tests☆16Oct 29, 2026Updated last week
- Project bulk/single-cell RNA-seq data to given LSI space☆13Jan 17, 2022Updated 4 years ago
- Target exome sequencing analysis for NYU NGS580 gene panel☆10Sep 29, 2021Updated 5 years ago
- Generate signature matrix from single cell data.☆12Apr 13, 2021Updated 5 years ago
- CoMEt: A Statistical Approach to Identify Combinations of Mutually Exclusive Alterations in Cancer☆20Jan 21, 2019Updated 7 years ago
- ☆10Dec 10, 2021Updated 4 years ago