rkimoakbioinformatics / oakvar

Related projects ⓘ

Alternatives and complementary repositories for oakvar

• SACGF / cdot
  Transcript versions for HGVS libraries
  ☆29Updated last month
• RKMlab / perf
  PERF is an Exhaustive Repeat Finder
  ☆33Updated 3 years ago
• wassermanlab / Variant_catalogue_pipeline
  Variant catalogue pipeline
  ☆25Updated 3 months ago
• mutalyzer / mutalyzer
  Tool suite for HGVS variant descriptions
  ☆34Updated this week
• dceoy / pdbio
  Pandas-based Data Handler for VCF, BED, and SAM Files
  ☆32Updated 3 years ago
• Genotek / ClassifyCNV
  ClassifyCNV: a tool for clinical annotation of copy-number variants
  ☆60Updated last year
• dancooke / starfish
  Intersect multiple VCF files with haplotype awareness
  ☆25Updated 3 years ago
• EBIvariation / CMAT
  ClinVar Mapping and Annotation Toolkit
  ☆19Updated 3 weeks ago
• ImperialCardioGenetics / UTRannotator
  VEP Plugin to annotate high-impact five prime UTR variants
  ☆24Updated 2 months ago
• ygidtu / trackplot
  trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…
  ☆75Updated 2 months ago
• biocorecrg / MOP2
  Master of Pores 2
  ☆23Updated last year
• gagneurlab / absplice
  ☆33Updated last month
• deepomicslab / SpecHLA
  SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …
  ☆36Updated last month
• pwwang / vcfstats
  Powerful statistics for VCF files
  ☆64Updated last year
• sigven / vcf2tsvpy
  Genomic VCF to tab-separated values
  ☆47Updated last year
• liguowang / CrossMap
  CrossMap is a python program to lift over genome coordinates from one genome version to another.
  ☆74Updated 3 weeks ago
• turrogroup / rsvr
  Rareservoir Database Tools
  ☆13Updated last year
• sigven / gvanno
  Generic human DNA variant annotation pipeline
  ☆56Updated 8 months ago
• UCSC-nanopore-cgl / margin
  ☆29Updated 2 years ago
• diskin-lab-chop / AutoGVP
  ☆18Updated 4 months ago
• WGLab / PhenoSV
  PhenoSV: Interpretable phenotype-aware model for the prioritization of genes affected by structural variants.
  ☆16Updated 6 months ago
• GooglingTheCancerGenome / sv-channels
  Deep learning-based structural variant filtering method
  ☆35Updated 11 months ago
• monarch-initiative / SvAnna
  Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing
  ☆33Updated 4 months ago
• seppinho / mutserve
  mtDNA Variant Caller
  ☆32Updated last month
• kensung-lab / INSurVeyor
  An insertion caller for Illumina paired-end WGS data.
  ☆22Updated 3 months ago
• CCBR / Pipeliner
  An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.
  ☆4Updated last year
• GiovannaNicora / MLVar
  ☆17Updated 2 years ago
• Kuanhao-Chao / splam
  ✂️ Deep learning-based splice site predictor that improves spliced alignments
  ☆36Updated 2 weeks ago
• pinellolab / AmpUMI
  Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)
  ☆41Updated 6 months ago
• nf-core / oncoanalyser
  A comprehensive cancer DNA/RNA analysis and reporting pipeline
  ☆46Updated this week