raphaelreme / trase-inLinks
Code for TraSE-IN paper
☆13Updated 7 months ago
Alternatives and similar repositories for trase-in
Users that are interested in trase-in are comparing it to the libraries listed below
Sorting:
- ☆12Updated 3 months ago
- Launch, store and reproduce ML experiments from configuration files☆12Updated 4 months ago
- Biological Mutliple Object Tracking (2D/3D)☆20Updated 2 months ago
- Code and data for "Particle tracking in biological images with optical-flow enhanced Kalman filtering"☆16Updated 3 months ago
- Unsupervised, one-shot, instance-based active contour/snake using deep learning features in python.☆18Updated 6 months ago
- replicAnt - generating annotated images of animals in complex environments with Unreal Engine☆67Updated last week
- Muggled SAM: Segmentation without the magic☆195Updated this week
- ☆21Updated 3 years ago
- Information and python tools for the GridTape-TEM dataset of an adult female fly's Brain And Nerve Cord☆15Updated 2 months ago
- DREEM Relates Every Entities' Motion (DREEM). Global Tracking Transformers for biological multi-object tracking.☆13Updated last week
- Code to the paper "Self-Supervised Graph Representation Learning for Neuronal Morphologies"☆16Updated last year
- Fast implementation of ThinPlateSpline with PyTorch☆39Updated last month
- A deep learning based method to uncover brain learning rules from behavior or neural experimental data.☆17Updated last year
- Collection of connectomic papers and datasets.☆16Updated 2 years ago
- Multiframe-Based animal pose estimation using deep learning enhanced by optical flow☆19Updated 2 years ago
- Code for processing and analyzing the automated reconstruction of the Lee lab's Female Adult Nerve Cord EM dataset☆13Updated 2 months ago
- Fast, volumetric cell detection. In development.☆22Updated last week
- Extracting high-resolution DINOv2 features for data-scarce applications like materials segmentation.☆27Updated 3 months ago
- ☆103Updated 3 months ago
- Multi-Object Tracker using Integer Linear Equations☆38Updated last month
- Transformer-based cell tracking for live-cell microscopy☆123Updated last week
- Time arrow prediction for live-cell microscopy☆21Updated last year
- SLEAP to Anipose triangulation pipeline for 3D multi-animal pose tracking.☆27Updated last year
- Python package for streaming video from multiple cameras to disk. Features real-time compression and debayering using FFmpeg.☆49Updated last month
- Re-usable GitHub Action scripts☆14Updated last week
- A Python package to download neuronal morphologies☆18Updated last week
- A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆114Updated 4 months ago
- Behavior Classifier Component from the Jax Animal Behavior System☆19Updated this week
- A monocular 3D pose estimation algorithm for humans and other animals☆42Updated this week
- Tool to annotate objects in images.☆20Updated 7 years ago