Alternatives and similar repositories for koft

Users that are interested in koft are comparing it to the libraries listed below

• raphaelreme / trase-in
  Code for TraSE-IN paper
  ☆13Updated 4 months ago
• raphaelreme / deep-trainer
  ☆12Updated last month
• marissaweis / ssl_neuron
  Code to the paper "Self-Supervised Graph Representation Learning for Neuronal Morphologies"
  ☆15Updated last year
• weigertlab / trackastra
  Transformer-based cell tracking for live-cell microscopy
  ☆109Updated this week
• funkelab / motile
  Multi-Object Tracker using Integer Linear Equations
  ☆38Updated last week
• raphaelreme / byotrack
  Biological particle tracking (2D/3D)
  ☆20Updated 2 weeks ago
• raphaelreme / expyrun
  Launch, store and reproduce ML experiments from configuration files
  ☆12Updated last month
• imyiningliu / cellstitch
  ☆12Updated last year
• live-image-tracking-tools / traccuracy
  Utilities for computing common accuracy metrics on cell tracking solutions with ground truth
  ☆36Updated last week
• talbenha / cell-tracker-gnn
  [ECCV 2022] Official PyTorch implementation of the paper - Graph Neural Network for Cell Tracking in Microscopy Videos
  ☆76Updated 2 years ago
• funkelab / lsd
  🌈
  ☆66Updated last month
• kreshuklab / MorphoFeatures
  MorphoFeatures code and data
  ☆22Updated 2 years ago
• DanuserLab / u-segment3D
  Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…
  ☆34Updated last week
• CAREamics / careamics
  A deep-learning library for denoising images using Noise2Void and friends (CARE, PN2V, HDN etc.), with a focus on user-experience and doc…
  ☆107Updated last week
• uhlmanngroup / muMatch
  Pipeline for putting surface meshes into correspondence
  ☆26Updated 2 years ago
• janelia-cellmap / cellmap-segmentation-challenge
  Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …
  ☆39Updated this week
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆58Updated 3 months ago
• tlambert03 / microsim
  ☆42Updated 2 weeks ago
• TuragaLab / DECODE
  This is the official implementation of our publication "Deep learning enables fast and dense single-molecule localization with high accur…
  ☆114Updated 2 years ago
• reimerlab / NEURD
  NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions
  ☆20Updated 6 months ago
• funkey / waterz
  Simple watershed and agglomeration library for affinity graphs.
  ☆25Updated 2 months ago
• mehta-lab / dynamorph
  Learn morphological states of dynamic cells
  ☆12Updated 2 years ago
• jmhb0 / o2vae
  [Nature Communications] O2VAE: a model for orientation-invariant representation learning (phenotyping) in cell biology data
  ☆36Updated 7 months ago
• peng-lab / leonardo_toolset
  ☆16Updated 2 months ago
• ClearAnatomics / ClearMap
  ClearMap 2 with WobblyStitcher, TubeMap and CellMap
  ☆130Updated last month
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆89Updated 2 months ago
• napari / napari-animation
  A napari plugin for making animations
  ☆89Updated last month
• GuillaumeMougeot / biom3d
  Easy Volumetric Segmentation with Deep Learning
  ☆28Updated this week
• weigertlab / spotiflow
  Accurate and efficient spot detection for microscopy data
  ☆108Updated this week
• vanvalenlab / deepcell-tracking
  Track cells and build cell lineages
  ☆35Updated last year