venkatachalamlab / ZephIR
ZephIR: multiple object tracking via image registration
☆16Updated 3 months ago
Alternatives and similar repositories for ZephIR
Users that are interested in ZephIR are comparing it to the libraries listed below
Sorting:
- TREES toolbox☆28Updated 2 weeks ago
- Fast, volumetric cell detection. In development.☆17Updated 2 weeks ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆40Updated last week
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆25Updated last year
- Match suite2p ROIs between imaging sessions☆25Updated 6 years ago
- Brainways☆16Updated 2 weeks ago
- Utility to create a basic Python project structure with tests, CI etc.☆28Updated last week
- Create movies from series of key-frames in napari.☆38Updated 3 years ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆73Updated 5 months ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆49Updated last year
- pipeline for volumetric cell segmentation☆12Updated last month
- This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.☆28Updated last week
- The ImageJ framework for quantification of neuronal anatomy☆48Updated last week
- motion correction☆17Updated 2 years ago
- Live Mouse Tracker analysis☆28Updated last month
- Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…☆14Updated 2 years ago
- NWB Explorer is a web application to visualise and analyse the content of NWB:N 2 files☆24Updated 2 months ago
- ☆22Updated 2 months ago
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆22Updated last week
- How to use Aligning Big Brains and Atlases with Python☆15Updated 2 years ago
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆29Updated last year
- Tools for distributed alignment of massive images☆81Updated 3 weeks ago
- Region Of Interest Classification and Tracking☆18Updated this week
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆140Updated last week
- Browser-based NWB visualization and DANDI exploration☆57Updated last week
- Flow-Registration toolbox for 2P motion compensation☆23Updated 9 months ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 4 years ago
- Web app for viewing results of ephys spike sorting☆25Updated 2 months ago
- ☆34Updated last year
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆37Updated last year