Alternatives and similar repositories for JNB-Zips

Users that are interested in JNB-Zips are comparing it to the libraries listed below

• PavlopoulosLab / NORMA

  View on GitHub
  Network annotation visualization
  ☆18May 21, 2025Updated 8 months ago
• blekhmanlab / host_gene_microbiome_interactions

  View on GitHub
  Analysis framework for integrating gut microbiome and host gene expression data
  ☆35Apr 25, 2022Updated 3 years ago
• MHH-RCUG / Wochenende

  View on GitHub
  Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3
  ☆37Aug 30, 2022Updated 3 years ago
• caporaso-lab / longitudinal-notebooks

  View on GitHub
  ☆12Feb 26, 2019Updated 6 years ago
• praneet1988 / CSBB-Shiny

  View on GitHub
  Computational Suite for Bioinformaticians and Biologists (CSBB) is a RShiny application developed with an intention to empower researcher…
  ☆36Apr 5, 2023Updated 2 years ago
• gnanibioinfo / EzMAP

  View on GitHub
  ☆11Apr 5, 2021Updated 4 years ago
• alexmsalmeida / metamap

  View on GitHub
  Snakemake workflow to map and quantify microbial genomes in metagenomic reads
  ☆13Oct 10, 2025Updated 4 months ago
• sysbio-curie / Roma

  View on GitHub
  Representation of Module Activity
  ☆10May 31, 2017Updated 8 years ago
• waldronlab / HMP16SData

  View on GitHub
  16S rRNA Sequencing Data from the Human Microbiome Project
  ☆10Oct 30, 2025Updated 3 months ago
• SamuelNicaise / variantconvert

  View on GitHub
  A customizable genetic variants file format converter.
  ☆11Oct 7, 2025Updated 4 months ago
• Albluca / rRoma

  View on GitHub
  An r interface to perform ROMA
  ☆10Aug 24, 2018Updated 7 years ago
• SegataLab / export2graphlan

  View on GitHub
  Conversion software tool for producing both annotation and tree files for GraPhlAn
  ☆11Feb 2, 2022Updated 4 years ago
• cdanielmachado / cooccurrence

  View on GitHub
  Supplementary data for co-occurrence manuscript
  ☆10Dec 19, 2019Updated 6 years ago
• soumitag / SLIDE

  View on GitHub
  A visualization tool for Systems-Level Interactive Data Exploration
  ☆12Jan 12, 2022Updated 4 years ago
• mwang87 / q2_metabolomics

  View on GitHub
  ☆11Dec 28, 2019Updated 6 years ago
• shuzhao-li / BTM

  View on GitHub
  Blood Transcription Modules for interpreting blood transcriptomics data
  ☆11Nov 25, 2024Updated last year
• UMCUGenetics / mutSigExtractor

  View on GitHub
  An R package for extracting mutational signatures from vcf files
  ☆11Feb 13, 2025Updated last year
• jtleek / jobs

  View on GitHub
  Jobs
  ☆12Apr 8, 2025Updated 10 months ago
• nikola-hartmann / microbiome_conferences

  View on GitHub
  Microbiome conferences and scientific meetings.
  ☆27Updated this week
• ahmedmoustafa / bioinformatics-toolbox

  View on GitHub
  Docker container for bioinformatics tools and pipelines
  ☆15Oct 11, 2024Updated last year
• Illumina / tHapMix

  View on GitHub
  Haplotype-based somatic genome simulator
  ☆10May 19, 2017Updated 8 years ago
• DyogenIBENS / FINSURF

  View on GitHub
  FINSURF is a tool designed to analyse lists of sequences variants in the human genome.
  ☆12Oct 24, 2022Updated 3 years ago
• bioinformatics-core-shared-training / Bulk_RNAseq_Course_Base

  View on GitHub
  ☆20Jan 19, 2026Updated 3 weeks ago
• gerberlab / mditre

  View on GitHub
  ☆13Feb 5, 2022Updated 4 years ago
• SegataLab / hclust2

  View on GitHub
  Hclust2 is a handy tool for plotting heat-maps with several useful options to produce high quality figures that can be used in publicatio…
  ☆12Jan 14, 2023Updated 3 years ago
• UCLouvain-CBIO / WSBIM2122

  View on GitHub
  Omics data analysis
  ☆15Dec 19, 2025Updated last month
• shihuang047 / re-benchmarking

  View on GitHub
  ☆15Jun 2, 2021Updated 4 years ago
• all-of-us / ukb-cross-analysis-demo-project

  View on GitHub
  Workbench demo project: cross-analysis of AoU and UKB.
  ☆14May 2, 2023Updated 2 years ago
• micom-dev / q2-micom

  View on GitHub
  A Qiime plugin for MICOM.
  ☆10Jan 7, 2026Updated last month
• dingdaisy / cooperative-learning

  View on GitHub
  ☆14Aug 10, 2022Updated 3 years ago
• microbiome / tutorials

  View on GitHub
  Tutorials
  ☆14Apr 2, 2022Updated 3 years ago
• tmbuza / iMAP

  View on GitHub
  iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline
  ☆13Updated this week
• microbiome-resources / Qiime2-Microbiome-workshop

  View on GitHub
  ☆15Mar 14, 2023Updated 2 years ago
• kevinmcgregor / mdine

  View on GitHub
  ☆12Apr 6, 2021Updated 4 years ago
• biocore / oecophylla

  View on GitHub
  shotgun pipeline
  ☆12Apr 3, 2019Updated 6 years ago
• UriaMorP / mprod_package

  View on GitHub
  Software implementation for tensor-tensor m-product
  ☆14Dec 14, 2023Updated 2 years ago
• SegataLab / preprocessing

  View on GitHub
  Raw sequence metagenomic reads pre-processing: trimming, QC, and host contamination
  ☆14Sep 1, 2025Updated 5 months ago
• FusionAnnotator / FusionAnnotator

  View on GitHub
  FusionAnnotator source code
  ☆16Aug 27, 2023Updated 2 years ago
• RabadanLab / Pegasus

  View on GitHub
  Annotation and Prediction of Oncogenic Gene Fusions in RNAseq
  ☆12Feb 20, 2016Updated 9 years ago