ocfnash / FM-IndexLinks
C++ implementation of FM Index data structure wrapped in Python
☆14Updated 2 years ago
Alternatives and similar repositories for FM-Index
Users that are interested in FM-Index are comparing it to the libraries listed below
Sorting:
- libsequence: a C++ class library for evolutionary genetic analysis☆53Updated 5 years ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆83Updated last year
- Bit packed vector of integral values☆27Updated 9 months ago
- BWT Text Indexing Library: a set of tools to work with BWT-based text indexes☆25Updated 3 years ago
- 📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.☆89Updated last week
- Bloom-filter based minimal perfect hash function library☆267Updated 3 months ago
- A tool for merging large BWTs☆25Updated 4 years ago
- An efficient external-memory algorithm for the construction of minimal perfect hash functions☆64Updated last year
- a minimal C++ interval tree implementation☆235Updated 4 years ago
- FM-Index full-text index implementation using RRR Wavelet trees (libcds) and fast suffix sorting (libdivsufsort) including experimental r…☆107Updated 10 years ago
- An optimal space run-length Burrows-Wheeler transform full-text index☆65Updated 2 years ago
- Fast C functions for the computing the positional popcount (pospopcnt).☆55Updated 5 years ago
- Succinct Data Structure Library☆107Updated 12 years ago
- Ultra fast MSD radix sorter☆10Updated 5 years ago
- SetSketch: Filling the Gap between MinHash and HyperLogLog☆48Updated 4 years ago
- Dynamic succinct/compressed data structures☆112Updated last year
- FM-index representation of a de Bruijn graph☆27Updated 8 years ago
- C++ Implementations of sketch data structures with SIMD Parallelism, including Python bindings☆154Updated last year
- Run-length compressed BWT with LZ77 sampled suffix array☆10Updated 3 years ago
- memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping☆64Updated 5 months ago
- dynamic-updateable-index☆11Updated 9 years ago
- BagMinHash - Minwise Hashing Algorithm for Weighted Sets☆26Updated 5 years ago
- Practical Dynamic de Bruijn Graphs☆18Updated 5 years ago
- Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index☆82Updated last year
- Wavelet tree based on a fixed block boosting technique☆16Updated 4 years ago
- An alignment-free, reference-free and incremental data structure for colored de Bruijn graph with application to pan-genome indexing.☆44Updated 3 years ago
- An experimental tool to find approximate max-cuts in a large graph☆10Updated 4 years ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆43Updated last year
- Header-only, gzread-like reader for gzip, bz2, and xz.☆11Updated 7 years ago
- Low memory multithreaded hash table☆24Updated 10 years ago