Alternatives and similar repositories for MCRIBS

Users that are interested in MCRIBS are comparing it to the libraries listed below

• braincharter / vasculature
  Region- and voxel-based probabilistic mapping of whole-brain veins and arteries (densities and diameter) in the MNI space
  ☆50Updated 3 years ago
• NeuroanatomyAndConnectivity / surfdist
  For calculating exact geodesic distances on cortical surface meshes
  ☆53Updated last year
• jmtyszka / atlaskit
  Tools for working with brain atlas labels
  ☆19Updated 2 years ago
• BIC-MNI / minc-toolkit-v2
  Version 2 of the minc-toolkit, uses tools based on ITK version 4.x
  ☆53Updated 7 months ago
• Aswendt-Lab / AIDAmri
  Atlas-based Imaging Data Analysis Pipeline (AIDA) for structural and functional MRI of the mouse brain
  ☆33Updated 2 weeks ago
• aces / CIVET_Full_Project
  CIVET Installer
  ☆30Updated 3 years ago
• nipreps / nibabies
  fMRIPrep Lifespan - A robust, transparent workflow tailored for neonate and infant MRI
  ☆37Updated this week
• UCL / PETPVC
  Partial Volume Correction in PET
  ☆65Updated last year
• Washington-University / NHPPipelines
  Enhancements of HCP Pipelines for non-human primates
  ☆30Updated 3 years ago
• DevelopmentalImagingMCRI / karawun
  Convert tractography studies from mrtrix into dicom for use in navigation software
  ☆17Updated 10 months ago
• johncolby / along-tract-stats
  A MATLAB toolbox for performing along-tract analysis of diffusion tensor imaging (DTI) MRI tractography data.
  ☆49Updated 12 years ago
• neurabenn / precon_all
  precon_all surface pipline
  ☆29Updated 3 weeks ago
• HumanBrainED / NHP-BrainExtraction
  ☆39Updated 3 years ago
• dfsp-spirit / brainload
  A python module designed to reduce your brain load while accessing FreeSurfer brain surface and morphometry data files of single subjects…
  ☆10Updated 3 years ago
• freesurfer / surfa
  Python utilities for medical image and surface-based analysis
  ☆38Updated 3 weeks ago
• Entodi / MeshNet
  Code and model of article "End-to-end learning of brain tissue segmentation from imperfect labeling" https://arxiv.org/abs/1612.00940
  ☆16Updated 7 years ago
• frankyeh / DSI-Studio
  A Tractography Tool for Diffusion MRI
  ☆151Updated last month
• layerfMRI / LAYNII
  Stand alone fMRI software suite for layer-fMRI analyses.
  ☆105Updated last month
• wwu-mmll / deepbet
  Fast brain extraction using neural networks
  ☆45Updated last year
• nipreps / dmriprep
  dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…
  ☆73Updated 2 months ago
• stnava / ANTsTutorial
  Guide to tutorial materials for ANTs/R
  ☆47Updated 7 years ago
• Inria-Empenn / Anima-Public
  Open source software for medical image processing from the Empenn team
  ☆42Updated 8 months ago
• grandjeanlab / MultiRat
  A Rat fMRI multi-center study
  ☆33Updated 3 years ago
• CoBrALab / MAGeTbrain
  Multiple Automatically Generated Templates brain segmentation algorithm
  ☆50Updated last year
• dmritrekker / trekker
  dMRI based fiber tracking using parallel transport tractography
  ☆28Updated 3 weeks ago
• nipreps / eddymotion
  Open-source eddy-current and head-motion correction for dMRI.
  ☆19Updated 11 months ago
• rordenlab / niimath
  niimath - a clone of fslmaths. Try the live demo:
  ☆71Updated 2 months ago
• openneuropet / PET2BIDS
  PET2BIDS helps you convert your PET data into BIDS! raw PET scanner files (e.g. ecat, dicom) and additional side files like .e.g excel sh…
  ☆31Updated last month
• PennLINC / qsiprep
  Preprocessing of diffusion MRI
  ☆171Updated last month
• PRIME-RE / RheMAP
  Non-linear warps between common rhesus macaque brain templates
  ☆28Updated last month