Temperature generator for Replica Exchange MD simulations
☆29Dec 14, 2022Updated 3 years ago
Alternatives and similar repositories for remd-temperature-generator
Users that are interested in remd-temperature-generator are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tutorials on doing AMBER based Metadynamics and Gaussian Accelerated MD (GaMD)☆12Dec 1, 2025Updated 3 months ago
- Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..☆48Feb 11, 2021Updated 5 years ago
- Tools to add restraints to FEP runs. Includes a workflow to determine reference structures and restraint widths from plain MD simulations…☆11Mar 12, 2026Updated last week
- Helper function for Markov State Models☆11Jun 25, 2024Updated last year
- Fragment Linker Prediction Using Deep Encoder-Decoder Network for PROTAC Drug Design☆12Oct 2, 2023Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A repository for the development of data analysis tools for replica exchange molecular dynamics (REMD) simulations☆13Feb 20, 2023Updated 3 years ago
- Biobb (BioExcel building blocks) packages are Python building blocks that create new layer of compatibility and interoperability over pop…☆65Dec 22, 2025Updated 3 months ago
- Generates Martini models for open carbon nanotubes to use with Gromacs.☆15Nov 24, 2021Updated 4 years ago
- To run metadynamics simulations using openMM (based on Peter Eastman's script)☆13Mar 18, 2019Updated 7 years ago
- ☆25Feb 28, 2023Updated 3 years ago
- Conversion of coarsegrain to atomistic (complete rewrite of the original CG2AT)☆33Jul 17, 2024Updated last year
- ☆25Jan 16, 2024Updated 2 years ago
- ☆31Mar 11, 2026Updated 2 weeks ago
- gromacs(Protein-Ligand Complex)☆11Sep 20, 2022Updated 3 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Tutorials and additional documentation for the WESTPA suite☆16Oct 20, 2025Updated 5 months ago
- Toolkit for free-energy calculation setup/analysis and biomolecular structure handling☆67Apr 16, 2021Updated 4 years ago
- A tutorials suite for BioSimSpace.☆35Oct 22, 2025Updated 5 months ago
- Bayesian Multistate Bennett Acceptance Ratio Method☆16Mar 17, 2026Updated last week
- Fork of library used in reading xtc files from GROMACS simulations☆14Mar 9, 2017Updated 9 years ago
- Toolkit for free-energy calculation setup/analysis and biomolecular structure handling☆172Mar 11, 2026Updated 2 weeks ago
- Density based object completion over PBC.☆30Dec 10, 2024Updated last year
- Molecular visualization for MDAnalysis with MolecularNodes in Blender☆18Mar 30, 2025Updated 11 months ago
- Useful Collective Variables for OpenMM☆17May 9, 2024Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Clustering tool for biomolecular structural ensembles and data in general.☆10Aug 24, 2020Updated 5 years ago
- Multiscale Simulation Tool for Backmapping☆22Mar 13, 2026Updated last week
- ☆16Dec 24, 2016Updated 9 years ago
- Wrap up Platform to launch all PELE features. [AdaptivePELE, MSM, LigandGrowing, Glide Rescoring]☆10Nov 10, 2022Updated 3 years ago
- Python package built on NAMD/OpenMM and OpenMMTools to perform binding free energy calculations using the TIES protocol.☆34Dec 10, 2023Updated 2 years ago
- Software tools for fragment-based drug discovery (FBDD)☆27Apr 6, 2020Updated 5 years ago
- Denoising diffusion probabilistic models for replica exchange☆25Feb 19, 2022Updated 4 years ago
- ☆70Jul 19, 2023Updated 2 years ago
- EXPRORER: Rational cosolvents set construction method for cosolvent molecular dynamics (CMD) with large-scale computation☆11Jul 28, 2022Updated 3 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- easyPARM is a computational tool developed to simplify the derivation of force field parameters for metal-containing molecular systems an…☆35Mar 12, 2026Updated last week
- The OpenMM Cookbook and Tutorials☆56Feb 11, 2026Updated last month
- Python module for identification of conserved water molecules from molecular dynamics trajectories.☆14Mar 13, 2026Updated last week
- Supernova's MM-PBSA binding free energy calculation tool.☆11Mar 15, 2026Updated last week
- PyAutoFEP: an automated FEP workflow for GROMACS integrating enhanced sampling methods☆207Sep 22, 2023Updated 2 years ago
- A command line application to launch molecular dynamics simulations with OpenMM☆40Apr 7, 2022Updated 3 years ago
- UROP Project @ Coley Group☆27Jan 22, 2023Updated 3 years ago